Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120189.Seq
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250...    28   6.6  
04_04_1488 - 33922253-33922361,33922459-33922649,33922752-339241...    28   8.8  
01_07_0041 + 40688242-40688278,40688396-40688502,40688612-406887...    28   8.8  

>06_03_1208 -
           28422941-28423139,28423854-28424434,28424705-28425078,
           28425235-28425339,28425902-28425970,28426084-28426156,
           28426395-28426478,28426616-28426648,28426731-28426790,
           28427535-28427627,28427851-28427970,28428804-28428886,
           28428887-28429007,28429114-28429164,28429245-28429333,
           28429429-28429561,28430220-28430354,28430581-28430952,
           28431679-28431796,28431883-28431998,28432131-28432442
          Length = 1106

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 22  RKYFRILWNYCLFIQRGVVVAGTHKMAVGTCTKW 123
           +K   +LWNYC  I   VV A     +VG    W
Sbjct: 559 KKIGDMLWNYCRGIDHSVVEAVQETKSVGAEVNW 592


>04_04_1488 -
           33922253-33922361,33922459-33922649,33922752-33924130,
           33924205-33924340,33924427-33924502,33924806-33924925,
           33925005-33925082,33925605-33925695,33925805-33925889,
           33925977-33926132,33926317-33926373,33926454-33926552,
           33926702-33926814,33926924-33927014
          Length = 926

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = +2

Query: 38  FSGTIVCLSNAESLWRERTKWRSVRAQNGEDGWMNKVSEVS 160
           ++GT+V +S+ + +    +KWR+++ +  E G+  +   VS
Sbjct: 298 YTGTVVGISDYDPMRWPNSKWRNLQVEWDEHGYGERPERVS 338


>01_07_0041 +
           40688242-40688278,40688396-40688502,40688612-40688707,
           40688859-40688915,40689033-40689194,40689310-40689394,
           40689648-40689738,40689813-40689977,40690121-40690240,
           40690330-40690402,40690482-40690650,40690741-40691651,
           40691839-40691931,40692065-40692255,40692343-40692455,
           40692757-40692783,40693915-40693949
          Length = 843

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 38  FSGTIVCLSNAESLWRERTKWRSVRAQNGEDGWMNKVSEVS 160
           F+GTI+   N + +W E + WRS++ +  E   + +   VS
Sbjct: 308 FTGTIIGSENLDPVWPE-SSWRSLKVRWDEPSTIPRPDRVS 347


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,216,328
Number of Sequences: 37544
Number of extensions: 269061
Number of successful extensions: 562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)