Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120189.Seq
         (731 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065948-1|BAC06161.1|  304|Homo sapiens seven transmembrane hel...    31   5.6  
AB065943-1|BAC06157.1|  304|Homo sapiens seven transmembrane hel...    31   5.6  
AY358106-1|AAQ88473.1|   78|Homo sapiens LCII3035 protein.             30   9.8  

>AB065948-1|BAC06161.1|  304|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 304

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query: 341 LLFNIVFVFRPIFKLLLCT-IGMDCHILTVMYY*MNGHNELNIC 469
           LLF  ++V   +  L + T IG+  H+ T MYY ++G + ++IC
Sbjct: 42  LLFLGIYVVTVVGNLSMITLIGLSSHLHTPMYYFLSGLSFIDIC 85


>AB065943-1|BAC06157.1|  304|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 304

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query: 341 LLFNIVFVFRPIFKLLLCT-IGMDCHILTVMYY*MNGHNELNIC 469
           LLF  ++V   +  L + T IG+  H+ T MYY ++G + ++IC
Sbjct: 42  LLFLGIYVVTVVGNLSMITLIGLSSHLHTPMYYFLSGLSFIDIC 85


>AY358106-1|AAQ88473.1|   78|Homo sapiens LCII3035 protein.
          Length = 78

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = +2

Query: 338 CLLFNIVFVFRPIFKLLLCTIGMDCHILTVMYY*MNGHNELNICIIILFK*NIQFIRLLK 517
           C++  I F+   +F+LLL  I  DCH+ +V    + G+   ++C   L+  N  + RL K
Sbjct: 3   CIILGITFLLSTLFELLLAYI--DCHVPSVGMPKVRGY--FSVCSFALW--NFYWPRLFK 56


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,875,614
Number of Sequences: 237096
Number of extensions: 1527114
Number of successful extensions: 2436
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2436
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)