Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120189.Seq
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82051-9|CAB04820.1|  350|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z82051-7|CAB04819.1|  364|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U41276-3|AAA82470.2|  517|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z82051-9|CAB04820.1|  350|Caenorhabditis elegans Hypothetical
           protein T23D5.12 protein.
          Length = 350

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 191 YILGVKLADQSLLQILYSSNHLRHFVHVPTAILCVPATTTPR 66
           Y + +KL  +S+  +L SS++  H + +PT   C P T  PR
Sbjct: 307 YRIAIKLLLKSIKSVLLSSSYFPHELSLPT---CTPQTPLPR 345


>Z82051-7|CAB04819.1|  364|Caenorhabditis elegans Hypothetical
           protein T23D5.10 protein.
          Length = 364

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 191 YILGVKLADQSLLQILYSSNHLRHFVHVPTAILCVPATTTPR 66
           Y + +KL  +S+  +L SS++  H + +PT   C P T  PR
Sbjct: 321 YRIAIKLLLKSIKSVLLSSSYFPHELSLPT---CTPQTPLPR 359


>U41276-3|AAA82470.2|  517|Caenorhabditis elegans Hypothetical
           protein C52B11.3 protein.
          Length = 517

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
 Frame = -3

Query: 498 CMFYLNKMIIQMFSSL*PF-I**YITVKIWQSIPIV---HSKSLKIGLKTKTILNRRQK 334
           C+F  +KM +  FSSL  F I  ++ +  +  + I+   HSK +++G+KT +I  R  K
Sbjct: 196 CLFTDSKMYVS-FSSLVSFYIPLFLILFAYGKVYIIATRHSKGMRMGIKTVSIKKRNGK 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,555,123
Number of Sequences: 27780
Number of extensions: 278432
Number of successful extensions: 563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)