Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120189.Seq
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           27   0.18 
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           27   0.18 
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    25   0.73 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.73 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.9  

>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = -3

Query: 192 LYPRRKTSRPELTSDTLFIQPSSPFCARTDRHFVRSRHNDSALD 61
           L P     +P    D ++++PS PFC +  +  +   H     D
Sbjct: 62  LKPYNPEHKPPGPKDLVYLEPSPPFCEKNPKLGILGTHGRQCND 105


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = -3

Query: 192 LYPRRKTSRPELTSDTLFIQPSSPFCARTDRHFVRSRHNDSALD 61
           L P     +P    D ++++PS PFC +  +  +   H     D
Sbjct: 63  LKPYNPEHKPPGPKDLVYLEPSPPFCEKNPKLGILGTHGRQCND 106


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 163 RAYFRYFIHPTIFAIL 116
           RA+ R  IHPT+F++L
Sbjct: 32  RAFCRNCIHPTVFSVL 47


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 163 RAYFRYFIHPTIFAIL 116
           RA+ R  IHPT+F++L
Sbjct: 480 RAFCRNCIHPTVFSVL 495


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 574 YHLLVHVLICLTNNFILSGVILINIMYCV 660
           Y +   +LI L    I+ G ++ NI+ CV
Sbjct: 36  YTVTQAILIALVLGSIIVGTVIGNILVCV 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,760
Number of Sequences: 438
Number of extensions: 3762
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)