Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120189.Seq
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19850.1 68414.m02490 transcription factor MONOPTEROS (MP) / ...    29   4.2  
At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identica...    28   5.6  
At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identica...    28   5.6  

>At1g19850.1 68414.m02490 transcription factor MONOPTEROS (MP) /
           auxin-responsive protein (IAA24) / auxin response factor
           5 (ARF5) identical to transcription factor MONOPTEROS
           (MP/IAA24/ARF5) SP:P93024 from [Arabidopsis thaliana]
          Length = 902

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 38  FSGTIVCLSNAESLWRERTKWRSVRAQNGEDGWMNKVSEVS 160
           + GTIV +S+ + L    +KWR+++ +  E G  +K + VS
Sbjct: 343 YMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVS 383


>At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identical
           to auxin response factor 1 GI:2245378 from [Arabidopsis
           thaliana]
          Length = 662

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 38  FSGTIVCLS-NAESLWRERTKWRSVRAQNGEDGWMNKVSEVS 160
           FSGTIV +  N  S+W + ++WRS++ Q  E   + +   VS
Sbjct: 308 FSGTIVGVQENKSSVWHD-SEWRSLKVQWDEPSSVFRPERVS 348


>At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identical
           to auxin response factor 1 GI:2245378 from [Arabidopsis
           thaliana]
          Length = 665

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 38  FSGTIVCLS-NAESLWRERTKWRSVRAQNGEDGWMNKVSEVS 160
           FSGTIV +  N  S+W + ++WRS++ Q  E   + +   VS
Sbjct: 308 FSGTIVGVQENKSSVWHD-SEWRSLKVQWDEPSSVFRPERVS 348


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,089,471
Number of Sequences: 28952
Number of extensions: 237092
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)