Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120188.Seq
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648 33 0.19
04_01_0197 + 2323790-2324098,2324145-2324774 33 0.19
10_02_0110 - 5371536-5372882 33 0.33
06_01_0008 + 141405-142421 31 0.76
11_06_0426 - 23372520-23372624,23372709-23372914,23373516-23373600 31 1.0
10_06_0008 - 9533424-9533475,9533526-9535344,9535599-9536364,955... 30 2.3
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242... 29 3.1
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906... 29 4.0
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 29 4.0
01_06_1094 - 34478538-34478624,34478860-34478931,34479154-344792... 29 4.0
06_03_0050 + 15980215-15981519 29 5.3
12_01_0436 - 3436886-3437559,3438738-3438924 28 7.1
11_04_0191 - 14692104-14692484 28 7.1
09_06_0072 - 20682424-20682870,20683928-20684854 28 7.1
07_01_0245 - 1803170-1803887,1803971-1804641 28 7.1
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90... 28 7.1
01_03_0010 - 11608537-11608786,11608816-11608940,11609152-116092... 28 7.1
01_01_0426 + 3234987-3235935,3236744-3236782,3237044-3237409,324... 28 7.1
06_02_0101 - 11816507-11816878,11817571-11817840,11818014-118180... 28 9.3
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 28 9.3
02_05_0886 + 32507324-32507938,32508103-32508252,32508498-325089... 28 9.3
01_06_1510 - 37859664-37861319 28 9.3
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688... 28 9.3
>04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648
Length = 857
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +1
Query: 496 IDGGHADLAEATDRSFCLPTK*LWLDATLKRLGKIAKTRAGNGAAG--QPHGGHCARRDS 669
+ G + D D+S L K L++ +RL + N P+ G + +
Sbjct: 504 VSGDYPDFQRLVDKSIRLEAKHKELESHKRRLANFRNQQGANQRVRYTNPYPGGSSSQQQ 563
Query: 670 QTQQPAAVPQPGRVLRGQQ 726
Q QQP P+P V+R Q
Sbjct: 564 QQQQPRPAPRPQFVVRVPQ 582
>04_01_0197 + 2323790-2324098,2324145-2324774
Length = 312
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +1
Query: 496 IDGGHADLAEATDRSFCLPTK*LWLDATLKRLGKIAKTRAGNGAAG--QPH-GGHCARRD 666
+ G + D D+S L K L++ +RL + N P+ GG +++
Sbjct: 215 VSGDYPDFQRLVDKSIRLEAKHKELESHKRRLANCRSQQGANQRVRYTNPYPGGSSSQQQ 274
Query: 667 SQTQQPAAVPQPGRVLR 717
Q QQP + P+P V+R
Sbjct: 275 QQQQQPRSAPRPQFVVR 291
>10_02_0110 - 5371536-5372882
Length = 448
Score = 32.7 bits (71), Expect = 0.33
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Frame = -2
Query: 335 ITPDLVMSTVCGCKY----SG-SPCFATLSGAGAGFGRHAQTSICTCRRRGHVLPVHNLH 171
I+PD +S + +Y +G S C+ G+ G R Q S+CT R R H L VH
Sbjct: 320 ISPDGKLSFIVTSRYFDGSAGVSSCYHLAFGSNGGCTRE-QVSVCTWRVRLHELRVHRSD 378
Query: 170 ILNC-WRC 150
+N W C
Sbjct: 379 AMNLRWFC 386
>06_01_0008 + 141405-142421
Length = 338
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +1
Query: 241 PNPAPAPDSVAKQGDPL-YLHPH-TVLITKSGVIQLIMK 351
P+P+P+P A+ DP +LH H T L++ IQ++++
Sbjct: 89 PSPSPSPSPAARHFDPSNFLHDHFTGLLSGGATIQIVLE 127
>11_06_0426 - 23372520-23372624,23372709-23372914,23373516-23373600
Length = 131
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = -2
Query: 755 VFAGAETQ-TRCCPRSTRPGCGTAAGCW-VWLSRLA 654
+F+ A T T C ++ +PG GT AG VWLSRLA
Sbjct: 42 LFSRAATSLTVRCEQTAKPGGGTGAGAADVWLSRLA 77
>10_06_0008 -
9533424-9533475,9533526-9535344,9535599-9536364,
9551969-9552097
Length = 921
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +1
Query: 496 IDGGHADLAEATDRSFCLPTK*LWLDATLKRLGKIAKTRAGNGAAG--QPHGGHCARRDS 669
+ G + D D+S L K L++ +RL + N P+ G + +
Sbjct: 539 VSGDYPDFQRLVDKSIRLEAKHKELESHKRRLANFRNQQGANQRVRYTNPYPGGSSSQQ- 597
Query: 670 QTQQPAAVPQPGRVLRGQQ 726
Q QQP + P+P V+R Q
Sbjct: 598 QPQQPRSAPRPQFVVRVPQ 616
>12_01_0318 -
2425178-2425267,2425830-2426008,2426594-2426654,
2426851-2427160,2428514-2428777,2432595-2433865
Length = 724
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 542 FVCQRNDCGSTRR*NGSARLRKRAP 616
FVC R C RR G ARLR+ +P
Sbjct: 430 FVCSRLACALLRRRRGRARLRRASP 454
>11_03_0026 -
9057965-9058234,9059410-9059522,9059612-9059802,
9060606-9060720,9061781-9061907,9062915-9062990,
9064247-9064365,9065430-9065593,9065666-9065779,
9065966-9066065,9066276-9066340,9068175-9068253,
9069513-9069659,9069904-9070161,9070657-9070852,
9071179-9071402,9072531-9072554
Length = 793
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 333 HARFGNEHCVWVQIQRVALLCHA 265
H FG++H + VQ+Q A++CHA
Sbjct: 203 HIVFGSQHNLPVQLQAKAVICHA 225
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +2
Query: 428 KYAPAVEMDTNDVIAKIDDLTQKLTVATQIWRK 526
++AP+VE +V A I+ +T+K+ + + W+K
Sbjct: 304 RHAPSVEHSLAEVAAHIEAVTEKIIMEEEKWKK 336
>01_06_1094 -
34478538-34478624,34478860-34478931,34479154-34479222,
34479312-34479422,34480390-34480528,34480590-34480705,
34480821-34480968,34481058-34481215,34481654-34481827,
34482592-34483056
Length = 512
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -2
Query: 635 WPAAPFPARVFAI-LPSRFS 579
WPAAP P RV+ +PSRF+
Sbjct: 106 WPAAPAPLRVYVYEMPSRFT 125
>06_03_0050 + 15980215-15981519
Length = 434
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -2
Query: 617 PARVFAILPSRFSVASSHNHFVGKQNERSVASAKSAWPP 501
P +FA LPS S+ S N+F G + AS ++A PP
Sbjct: 274 PRELFA-LPSASSLLLSRNNFTGSLAVPAFASERAATPP 311
>12_01_0436 - 3436886-3437559,3438738-3438924
Length = 286
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/54 (33%), Positives = 22/54 (40%)
Frame = -2
Query: 728 RCCPRSTRPGCGTAAGCWVWLSRLAQCPPCGWPAAPFPARVFAILPSRFSVASS 567
R R G W + S LA PAAPFPA + P + S AS+
Sbjct: 24 RPAEREPEEGAAVEGVWWSYCSELAAAAAAPSPAAPFPAG-YVPSPGQHSPASA 76
>11_04_0191 - 14692104-14692484
Length = 126
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 570 RRDAETARQDCENAR-RKRRSWPTAWRT 650
RR + TA C R R+RRS PT WR+
Sbjct: 10 RRSSVTAHGGCGKQRWRQRRSRPTRWRS 37
>09_06_0072 - 20682424-20682870,20683928-20684854
Length = 457
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 244 NPAPAPDSVAKQGDPLYLHPHTVLITKSGVIQL-IMKSKLPYAIELQEW 387
NPAPAP P L +L+ K+ V Q+ + S L + I L +W
Sbjct: 125 NPAPAPAPTPTPPPPGILESLAMLVIKAVVFQVSALISCLTFPIRLLQW 173
>07_01_0245 - 1803170-1803887,1803971-1804641
Length = 462
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 257 AGAGFGRHAQTSICTCRRRGHVLP 186
AGAG G H TS C C+ R + LP
Sbjct: 25 AGAGAGVHPSTSPCYCKIRLNKLP 48
>04_01_0083 +
904473-905167,905247-905347,905902-905994,907322-907968
Length = 511
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 224 TFEHADQIQHLLQIAWQSRATRCICTHTQCSL 319
+ EH I+H ++I WQ R +C C L
Sbjct: 255 SLEHHQAIRHAVKIGWQKYIKRYLCLAIFCML 286
>01_03_0010 -
11608537-11608786,11608816-11608940,11609152-11609217,
11609741-11609872,11610507-11610608,11610743-11610940,
11611015-11611161,11611321-11611431,11613241-11613780,
11613847-11614003,11614148-11614297,11614375-11614514,
11615346-11615468,11615561-11615677,11617184-11617357,
11617768-11617909,11618076-11618194,11619773-11619955
Length = 991
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +2
Query: 149 DIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHLLQIAWQSRATRCIC 298
D++S + + + + H+D ++ T E DQ+ ++L I C C
Sbjct: 565 DVSSVIGHYDTSKQNVHHMDNEWWETQERGDQVDYVLDIGEVGPRATCCC 614
>01_01_0426 +
3234987-3235935,3236744-3236782,3237044-3237409,
3240871-3242315
Length = 932
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 598 IAKTRAGNGAAGQPHGGHCARR--DSQTQQPAAVPQPGRVLRG 720
+A+ RAG AAG G C RR D+ AA+ +PG V+ G
Sbjct: 383 VARRRAG--AAGVALPGACVRRRLDAGVAPAAALARPGAVIAG 423
>06_02_0101 -
11816507-11816878,11817571-11817840,11818014-11818076,
11818610-11819002
Length = 365
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +1
Query: 244 NPAPAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSKLPYAIELQEWL 390
+PAPA +A G P+T+L+ SGVI +I S P ELQ +L
Sbjct: 20 SPAPAKIVIADLG--CSSGPNTLLVV-SGVISMISTSGYPEKTELQFFL 65
>04_04_1105 -
30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 698 CGTAAGCWVWLSRLAQCPPCGWPAAPFPARV 606
CG V LSR A CP CG A +PAR+
Sbjct: 89 CGELLSVPVGLSRCA-CPLCGAELAVYPARL 118
>02_05_0886 +
32507324-32507938,32508103-32508252,32508498-32508935,
32509038-32509151,32509256-32509852
Length = 637
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -2
Query: 593 PSRFS--VASSHNHFVGKQNERSVASAKSAW 507
P++FS +A++ N+F+GK E S + S W
Sbjct: 597 PNKFSAAIAAAINNFMGKDGESSSGKSSSKW 627
>01_06_1510 - 37859664-37861319
Length = 551
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 297 APTHSAHYQIWRDSTDNEVQIALRHRITRMA 389
AP H H+Q++R S +ALRHR R A
Sbjct: 24 APAHG-HHQVFRCSAAKPSPLALRHRAGRPA 53
>01_06_0996 +
33667663-33667900,33668019-33668091,33668785-33668841,
33668970-33669067,33669482-33669637,33669744-33670366,
33670484-33670560,33671551-33671805,33671950-33672067,
33672174-33672345,33672434-33672975
Length = 802
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -1
Query: 291 QRVALLCHAIWSRCWIWSACSNVDLYLP-STWT 196
+RV + W R W+ CS VDL P + WT
Sbjct: 31 ERVGYGMPSFWPRSTKWALCSEVDLIGPLNNWT 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,997,229
Number of Sequences: 37544
Number of extensions: 545320
Number of successful extensions: 1988
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1988
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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