Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120188.Seq
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55199| Best HMM Match : PKD (HMM E-Value=0.75)                      29   3.1  
SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)                 29   3.1  
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_45241| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_10444| Best HMM Match : Drf_FH1 (HMM E-Value=9.2)                   28   7.2  
SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_55199| Best HMM Match : PKD (HMM E-Value=0.75)
          Length = 462

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +1

Query: 637 PHGGHCARRDSQTQQPAAVPQPGRVLRGQQRVCVSAPAKTIA 762
           P G H  R D +  +   +P+ GRV RG+Q   V A  +TIA
Sbjct: 2   PSGDHVPRED-RILKGEPMPRGGRVPRGEQERRVEAERQTIA 42


>SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)
          Length = 323

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 300 VQIQRVALLCHAIWSRCWIWSACS--NVDLYLPST 202
           V +QRV ++C  +W  C I+SA +   V +Y P T
Sbjct: 157 VTVQRVLIICGGMWVSCSIFSAVTLYGVHVYHPVT 191


>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
 Frame = -2

Query: 299 CKYSGSPCFATLSGAG-----AGFGRHAQTSICTCRRRGHVLPVHNLHILNCWRCPW 144
           CK +   C     G G     A   R A+  +CT  R   +L  +N  + NC RC +
Sbjct: 168 CKPNNLRCVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTY 224


>SB_45241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 531 RSLILFANEMIVARRDAETARQDCENARRKRRS 629
           RS    AN  I ++RD  T++ DC+ +   +R+
Sbjct: 55  RSTSSLANNTIPSKRDKRTSKHDCDGSANNKRT 87


>SB_10444| Best HMM Match : Drf_FH1 (HMM E-Value=9.2)
          Length = 263

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +1

Query: 592 GKIAKTRAGNGAAGQPHGGHCARRDSQTQQPAAVPQPGRVLRGQQRVCVSAPA 750
           GK A T   + A  Q HG   A  +   Q+   +P P RVL    +V V  P+
Sbjct: 190 GKSAITE-NDAAVAQQHGNPVAVMEVAVQENTKIPVPLRVLTPPAKVTVWVPS 241


>SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 613 AGNGAAGQPHGGHCARRDSQTQQPAAVPQPGRVLRG 720
           AG G +  P     +RR + TQ+P + P P   L G
Sbjct: 253 AGKGRSASPGAKRVSRRYTNTQRPTSQPPPPPPLTG 288


>SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1421

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 238 RPNPAPAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSKL 360
           RP+  P    ++ +    +LH  ++L+TK G ++++   K+
Sbjct: 125 RPSSLPCGRCLSDRDASKFLHTTSILLTKKGSLKIVFNEKI 165


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +1

Query: 274 KQGDPLYLHPHTVLITKSGVIQLIMKSKLPYAIELQEWL-LEEVIP-QVLCTAQVRA 438
           K   P   HP TVLI    +I L + + L   I LQ  L L+ +IP QVL    V A
Sbjct: 325 KSSPPTSTHPSTVLIPLQVLIPLQVLTPLQVLIPLQVLLPLQVLIPLQVLIPLHVLA 381


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,778,079
Number of Sequences: 59808
Number of extensions: 581619
Number of successful extensions: 1620
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1618
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)