Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120188.Seq
         (762 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC101387-1|AAI01388.1|  663|Homo sapiens PLEKHN1 protein protein.      31   3.4  
AF428101-1|AAL26561.1|  599|Homo sapiens dachshund 2 protein.          31   5.9  
AB075843-1|BAB85549.1|  488|Homo sapiens KIAA1963 protein protein.     30   7.8  

>BC101387-1|AAI01388.1|  663|Homo sapiens PLEKHN1 protein protein.
          Length = 663

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -2

Query: 719 PRSTR-PGCGTAAGCWVWLSRLAQCPPCGWPAAPFPARVFAILPSR 585
           PR T  PG G     W+  + +  C     PA P PA +  + PSR
Sbjct: 170 PRGTPDPGLGEGPALWLRSTCVYVCALSALPAGPLPAPLLVLCPSR 215


>AF428101-1|AAL26561.1|  599|Homo sapiens dachshund 2 protein.
          Length = 599

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 561 IVARRDAETARQDCENARRKRR 626
           ++ R+D ET   DC NARRKR+
Sbjct: 146 LITRKDFETLFTDCTNARRKRQ 167


>AB075843-1|BAB85549.1|  488|Homo sapiens KIAA1963 protein protein.
          Length = 488

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 586 RLGKIAKTRAGNGAAGQPHGGHCARRDSQTQQPAAVPQPGRVLRGQQ 726
           RL ++    +  G  G P    C    S  ++PAA P+PG   RG +
Sbjct: 72  RLDRVPLPASSPGVGGSPCPPACTPCRSSLREPAAPPRPGSEPRGSR 118


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,629,998
Number of Sequences: 237096
Number of extensions: 2686174
Number of successful extensions: 8563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8563
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9144232952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)