Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120188.Seq
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    29   4.8  
U00048-3|AAB53827.3|  315|Caenorhabditis elegans Nematode astaci...    28   8.3  
AF040660-2|AAC71147.1|  302|Caenorhabditis elegans Collagen prot...    28   8.3  
AC006618-5|ABB88234.1|  513|Caenorhabditis elegans Gaba/glycine ...    28   8.3  
AC006618-4|ABB88233.1|  546|Caenorhabditis elegans Gaba/glycine ...    28   8.3  

>Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical
           protein ZK632.5 protein.
          Length = 824

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +2

Query: 134 RFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQ-HLLQIAWQ---SRATRCICT 301
           R   +D  +SLK V+  + + V +DG+YK        ++ ++ Q+AW    +  TR +  
Sbjct: 93  RLSDEDFENSLKEVSLSQKLMVRIDGEYKYRLYSKPIVRNNIPQLAWDISPALRTRKVAE 152

Query: 302 HTQCSLPN 325
             + S PN
Sbjct: 153 KDEISPPN 160


>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = -2

Query: 290 SGSPCFATLSGAGAGFGRHAQTSIC---TCRRRGHVLPVHNLHILN 162
           +G P F  ++G GAG   H    IC    CR     LP  N H +N
Sbjct: 607 NGKPSFCEVAGCGAGEICHETIEICGEPPCRSMATCLPTTN-HTVN 651


>U00048-3|AAB53827.3|  315|Caenorhabditis elegans Nematode astacin
           protease protein 4 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -1

Query: 294 IQRVALLCHAIWSRCWIWSACSN---VDLYLPSTWTRIARSQF 175
           IQR +L+  AI++ CW  S  +N   +D  +P T T +  + F
Sbjct: 4   IQRYSLVFCAIFATCWTASVVNNKQVIDTSVPQTETTLNDADF 46


>AF040660-2|AAC71147.1|  302|Caenorhabditis elegans Collagen protein
           88 protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +1

Query: 616 GNGAAGQPHGGHCARRDSQTQQPAAVPQPG 705
           GNGAAG P     A    Q  QP A  QPG
Sbjct: 205 GNGAAGAPGPQGPAGNAGQAGQPGADGQPG 234


>AC006618-5|ABB88234.1|  513|Caenorhabditis elegans Gaba/glycine
           receptor family (seegbr) protein 2, isoform b protein.
          Length = 513

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
 Frame = +2

Query: 398 RSFLKCYARRKYAPAVEMDTNDVIAKIDDL--TQKLTVATQIWRK----QPIAHFVCQRN 559
           +++   ++  + AP V+   N+     +++   QK T  +++W++    + +AH+  + N
Sbjct: 400 QAYSNSFSDEEAAPVVQPPQNEDAEAQEEVWAEQKETNLSEVWKESDPAERLAHWNEKEN 459

Query: 560 DCGSTRR*NGSARLRKRAPE 619
           D  S    NG A +R  A E
Sbjct: 460 DASSPLMGNGRAHVRYGAAE 479


>AC006618-4|ABB88233.1|  546|Caenorhabditis elegans Gaba/glycine
           receptor family (seegbr) protein 2, isoform a protein.
          Length = 546

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
 Frame = +2

Query: 398 RSFLKCYARRKYAPAVEMDTNDVIAKIDDL--TQKLTVATQIWRK----QPIAHFVCQRN 559
           +++   ++  + AP V+   N+     +++   QK T  +++W++    + +AH+  + N
Sbjct: 400 QAYSNSFSDEEAAPVVQPPQNEDAEAQEEVWAEQKETNLSEVWKESDPAERLAHWNEKEN 459

Query: 560 DCGSTRR*NGSARLRKRAPE 619
           D  S    NG A +R  A E
Sbjct: 460 DASSPLMGNGRAHVRYGAAE 479


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,545,718
Number of Sequences: 27780
Number of extensions: 424356
Number of successful extensions: 1259
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)