Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120188.Seq
(762 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative ... 31 0.84
At5g08630.1 68418.m01026 DDT domain-containing protein low simil... 30 1.5
At5g43720.1 68418.m05345 expressed protein 30 1.9
At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-contain... 29 4.5
At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-contain... 29 4.5
At5g59500.1 68418.m07457 expressed protein 28 5.9
At5g03560.1 68418.m00314 expressed protein 28 5.9
At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative... 28 5.9
At2g02790.1 68415.m00222 calmodulin-binding family protein very ... 28 5.9
At5g43490.1 68418.m05317 hypothetical protein similar to unknown... 28 7.8
At4g25320.1 68417.m03643 DNA-binding protein-related contains Pf... 28 7.8
At1g70420.1 68414.m08102 expressed protein 28 7.8
>At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative
similar to GTL1 [Arabidopsis thaliana] GI:2664198
Length = 669
Score = 31.1 bits (67), Expect = 0.84
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 646 RHAVGQLRRFRRAFSQSCRAVSASRRATIISLANKMSDRL--LPPNL 512
R + +L R SQ RA SASR A IISL K++ LPP+L
Sbjct: 308 RQEMARLAREHEVMSQE-RAASASRDAAIISLIQKITGHTIQLPPSL 353
>At5g08630.1 68418.m01026 DDT domain-containing protein low
similarity to SP|Q9NRL2 Bromodomain adjacent to zinc
finger domain protein 1A (ATP-utilizing chromatin
assembly and remodeling factor 1) (ATP-dependent
chromatin remodelling protein) (Williams syndrome
transcription factor-related chromatin remodeling factor
180) {Homo sapiens}; contains Pfam profile PF02791: DDT
domain
Length = 723
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/87 (28%), Positives = 38/87 (43%)
Frame = +2
Query: 374 NYKNGFWRRSFLKCYARRKYAPAVEMDTNDVIAKIDDLTQKLTVATQIWRKQPIAHFVCQ 553
++K + R+FLK + R ++ ND +AK ++T+K+ Q V Q
Sbjct: 170 SWKKFPFSRNFLKSFIRDSTCHSIPWVVNDYLAKAHEITRKIPKELQNKYVFQNGELVQQ 229
Query: 554 RNDCGSTRR*NGSARLRKRAPETAQLA 634
R T R N R RKRA +A
Sbjct: 230 RKQEDKTGREN---RKRKRAENGKHVA 253
>At5g43720.1 68418.m05345 expressed protein
Length = 329
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 640 HGGHCARRDSQTQQPAAVPQPGRVLRGQQR 729
HGG+ RRDS+ +Q A + +VLR +++
Sbjct: 3 HGGYAKRRDSEPKQTAGSSRRSKVLRVEKK 32
>At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-containing
protein / RhoGAP domain-containing protein weak
similarity to rho-GTPase activating protein [Homo
sapiens] GI:14245732; contains Pfam profiles PF00169: PH
domain, PF00620: RhoGAP domain
Length = 870
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 56 QVKIGEFKFGEDTFTLRYVLGDEQPVRFVAKDIASSLKYVNCERAIR 196
Q G F DT +Y+ RF+ +D S+L YVN ER R
Sbjct: 691 QTHFGSFSDARDTH--QYLQNHNPQKRFLQQDFDSTLAYVNHERKQR 735
>At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-containing
protein / RhoGAP domain-containing protein weak
similarity to rho-GTPase activating protein [Homo
sapiens] GI:14245732; contains Pfam profiles PF00169: PH
domain, PF00620: RhoGAP domain
Length = 822
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 56 QVKIGEFKFGEDTFTLRYVLGDEQPVRFVAKDIASSLKYVNCERAIR 196
Q G F DT +Y+ RF+ +D S+L YVN ER R
Sbjct: 691 QTHFGSFSDARDTH--QYLQNHNPQKRFLQQDFDSTLAYVNHERKQR 735
>At5g59500.1 68418.m07457 expressed protein
Length = 396
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 644 PCGWPAAPFPARVFAILPSRFSVASS 567
P W APFP R + +P R S++SS
Sbjct: 56 PSIWSCAPFPVRKGSWVPPRCSISSS 81
>At5g03560.1 68418.m00314 expressed protein
Length = 241
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 556 SLANKMSDRLLPPNLRGHRQFLR 488
++ + + DR LPP LRG R F+R
Sbjct: 81 AVIDAVHDRKLPPELRGRRDFVR 103
>At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative
(UBP1) similar to GI:11993461
Length = 1083
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = +1
Query: 505 GHADLAEATDRSFCLPTK*LWLDATLKRLGKIAKTRAGNGAAGQPH------GGHCARRD 666
GH D E D S + T+ D + RL + + GA + H GGH RRD
Sbjct: 987 GHVDFQEFIDLSKYMDTRCSEEDEPVYRLAGLVEHL---GAMSRGHYVSYIRGGHKERRD 1043
Query: 667 SQTQQP 684
S T++P
Sbjct: 1044 SDTKEP 1049
>At2g02790.1 68415.m00222 calmodulin-binding family protein very low
similarity to SP|P12036 Neurofilament triplet H protein
{Homo sapiens}; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 636
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +3
Query: 183 NGQYVSTSTASTNRRLSMPTKSSTCSR*RG--KAGR--PAVFAPTHSAHYQI 326
NG S +T ++RR S+P K + G ++GR P+ APT SA +I
Sbjct: 472 NGNVASENTKPSDRRASLPAKIENHHQDDGLTQSGRKIPSYMAPTASAKARI 523
>At5g43490.1 68418.m05317 hypothetical protein similar to unknown
protein (gb|AAF20218.1)
Length = 131
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 235 CRPNPAPAPDSVA--KQGDPLYLHPHTVLITKSGVIQLIMKSKLPYAIELQEWLL 393
C P+P A V + G+P PH L + ++ + + LP + QEWLL
Sbjct: 33 CPPSPLAATMKVKVKENGEPSAKPPHPDLKYLNQILHVPTRELLPEIDDDQEWLL 87
>At4g25320.1 68417.m03643 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 404
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 201 TSTASTNRRLSMPTKSSTCSR*RGKAGRPAVFAP 302
T A+T L+MPT++++ + + K GRP + P
Sbjct: 64 TENAATPFSLTMPTENTSAEQLKKKRGRPRKYNP 97
>At1g70420.1 68414.m08102 expressed protein
Length = 272
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 183 NGQYVSTSTASTNRRLSMPTKSSTCSR*RGKAGRPAVFAPTHSAHYQIW 329
NG ++ST+ST RLS KSS + + K + T SAH +++
Sbjct: 187 NGSSSTSSTSSTAARLSGVVKSSEKGKEKTKTDKKKDKMRTKSAHEKLY 235
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,487,181
Number of Sequences: 28952
Number of extensions: 386600
Number of successful extensions: 1103
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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