Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120185.Seq
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo...    30   0.31 
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    25   8.9  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    25   8.9  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    25   8.9  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    25   8.9  

>SPMIT.08 |||mitochondrial ribosomal small
           subunit|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 227

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
 Frame = -1

Query: 493 SSIFNRNLFISKYNAIALIVTDDAHLLCNYHLD-RVVVNAPQKV*HVDRFDSIQLNF--G 323
           S+ +  +L  SKY  IA+I+  +  +     +D +  +N P K+     F  + LN   G
Sbjct: 106 STPYGSSLIFSKY--IAIIIGSNPKIASTLWIDPKRFINLP-KLQSDSIFKILGLNVPKG 162

Query: 322 LVGLHRFQQIARSDRLSRQNF*TSVLLGVMSLINNDAAV*EAVVLMVCNMSTAAICV 152
             G+H    + + + LS +   T+++ G + L NN     E+ + +   M T  I V
Sbjct: 163 WKGIHISLNLIKWNSLSSRGRITNIIKGSVPLTNNSNGYDESSLAIYSKMGTIQIKV 219


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 500 AIGIWPQIFPLLCDEHQNVQLNT-DVLINFIMHV 598
           AI ++P + PLL DE++ ++    DV   F+  +
Sbjct: 495 AIKLFPSVVPLLIDENEGIRRTAEDVTDQFLSRI 528


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 533 LCDEHQNVQLNTDVLINFI 589
           +CD H+N   N D+L  F+
Sbjct: 387 ICDLHENTSFNIDILPGFL 405


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 285 ERAICWNRCKPTRPKLS*IESKRSTC*TFWGAFTTTRSK 401
           E   C N   P  P+++ +  + S     +G+ +TTRSK
Sbjct: 172 ENESCLNNAAPGSPEVAVLSFRHSFHGRLFGSLSTTRSK 210


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 78  YHRYHLLKQSWLSSISRDISLS 13
           Y++  L K+SW  S+S +ISLS
Sbjct: 107 YYQEALRKKSWSRSLSNNISLS 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,863,279
Number of Sequences: 5004
Number of extensions: 54297
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)