Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120185.Seq
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0585 - 18998013-18998306,18998448-18998630,18999048-189990...    33   0.25 
02_04_0132 - 20058638-20058907                                         29   4.0  
06_01_1126 - 9277885-9277935,9278129-9278209,9278297-9278350,927...    29   5.3  
01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165     29   5.3  
12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,178...    28   7.1  
11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,185...    28   7.1  
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325...    28   9.3  

>10_08_0585 -
           18998013-18998306,18998448-18998630,18999048-18999089,
           18999226-18999495,18999903-19000454,19000546-19000770,
           19001435-19001640,19001738-19001936,19002166-19002381,
           19002887-19002991,19003127-19003243,19003366-19003548,
           19004292-19004468,19004714-19004816,19005066-19005523
          Length = 1109

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
 Frame = -1

Query: 559 LHVLMFVAEQRKYLGPYAN---CIGSSIFNRNLFISKYNAIALIVTDDAHLLCNYHLDRV 389
           L+V +FVA+ ++YL P+A    C   S + R+L      A++++V  D +    Y L+++
Sbjct: 425 LNVAVFVAQYKEYLHPFAEELLCNKISHWERSLRELAAQALSMLVQYDMNYFAGYALEKL 484

Query: 388 V 386
           V
Sbjct: 485 V 485


>02_04_0132 - 20058638-20058907
          Length = 89

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 213 RPFERPWC*WFATCRRPPFA 154
           +PF  PWC +   C +PPF+
Sbjct: 14  KPFVAPWCRYPLLCNQPPFS 33


>06_01_1126 -
           9277885-9277935,9278129-9278209,9278297-9278350,
           9278433-9278564,9278641-9278715,9279056-9279133,
           9279215-9279327,9279421-9279535,9280565-9280754,
           9281355-9281464,9281559-9281654,9281756-9281818,
           9281911-9281988,9282452-9282564,9282664-9282721,
           9282797-9282920,9282999-9283060,9283131-9283195,
           9283264-9283324,9284242-9284307,9284472-9284531,
           9284830-9284960,9285517-9285592,9285701-9285769,
           9286065-9286112,9286552-9286671,9286918-9287034,
           9287290-9287405,9288348-9288519,9289057-9289100,
           9290359-9290712,9291680-9291806
          Length = 1072

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 135 PAVCCGGFFVFATCCCQCPYHRYHLLKQ 52
           P      F   A+CCC+ P H+ HL  Q
Sbjct: 105 PVDATAPFVASASCCCRHPVHQQHLRLQ 132


>01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165
          Length = 476

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 144 KGLPAVCCG--GFFVFATCCCQCPYHRYHLLKQSWLSSISRDISLS 13
           K LP + CG  G ++F T   +  + +YHL  ++W   I   I  S
Sbjct: 386 KALPTIFCGDTGGYIFHTPPTELFFTQYHLSSRTWSPLIDGSIGNS 431


>12_01_0237 +
           1782593-1782778,1784942-1784996,1785086-1787028,
           1787103-1787261,1787432-1787603,1787705-1788003,
           1788278-1788583
          Length = 1039

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -1

Query: 196 VVLMVCNMSTAAICVCAEGFAGGXXXXXXRVCDMLLPVSISSIS 65
           ++LMVC + + A+ +  EG+  G       +  + L V ++++S
Sbjct: 177 IILMVCALLSVAVGLATEGWPKGMYDGLGIILSIFLVVMVTAVS 220


>11_01_0240 +
           1852186-1852371,1854183-1854237,1854391-1856267,
           1856342-1856500,1856692-1856863,1856965-1857263,
           1857539-1857844
          Length = 1017

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -1

Query: 196 VVLMVCNMSTAAICVCAEGFAGGXXXXXXRVCDMLLPVSISSIS 65
           ++LMVC + + A+ +  EG+  G       +  + L V ++++S
Sbjct: 155 IILMVCALLSVAVGLATEGWPKGMYDGLGIILSIFLVVMVTAVS 198


>06_01_0456 -
           3249662-3249710,3249838-3250451,3250694-3250780,
           3251509-3252384,3252445-3252534,3252645-3252696,
           3253117-3253168,3253265-3253363,3253444-3253528,
           3253620-3253668,3253749-3253816,3254417-3254482,
           3255690-3255741,3256685-3256767,3256915-3256946,
           3257271-3257466,3258542-3258607,3259797-3259869,
           3260010-3260224
          Length = 967

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 113 KPPQQTAGKPFGANANGG-RRHVANHQHHGLSNGRVVVNQRHYAQ*N*SLKILSTQSVG 286
           +PP    G+  GANA+G      ++H H  +SN    + Q   AQ + + ++L +Q  G
Sbjct: 773 RPPPGVPGQAIGANAHGAPPAQQSHHVHRLVSNLMNQLGQATVAQPSTAPQVLPSQPGG 831


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,873,117
Number of Sequences: 37544
Number of extensions: 370345
Number of successful extensions: 1011
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)