Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120185.Seq
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.58 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.1  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 80  GHWQQHVANTKKPPQQTAGKPFGANANGGRRHVANHQHHGLS 205
           GHWQ        PP+QT   P     +G RR     +++ +S
Sbjct: 383 GHWQMSCVACSPPPRQT---PPSRKESGRRRRRRTPRYNSVS 421


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 358 VDRFDSIQLNFGLVGLHRFQQIARSDRLSRQN 263
           +DR D++     +  + R  +I R DR+ R N
Sbjct: 498 MDRMDTMDRTDKMSRIDRMDKIDRMDRMDRTN 529


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 657  RRETRASSSQRQVPPILRRVP**NLFCASQRR 752
            R + + +SSQ+Q+P  +R     +  C + RR
Sbjct: 1307 RNQQQQASSQQQIPESMRSKALIDQLCRNSRR 1338


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 225 INDITPNKTEV*KFCLLNLSERAICW 302
           ++DI    T +    LLNLSE  I W
Sbjct: 538 LSDINGVFTSIASLLLLNLSENHIEW 563


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,076
Number of Sequences: 438
Number of extensions: 4069
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)