Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120184.Seq
         (709 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.60 
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   4.3  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    21   7.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   9.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   9.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 601  TTPWPRSDSTIRTTATDPT 545
            T+PW  + +T RTT T PT
Sbjct: 1048 TSPWWTTTTTRRTTTTRPT 1066


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +2

Query: 251 RSEQNYAMSSVNSENVDDDYEHAYAYIVDDD 343
           +S+ ++++ S+ S+  D++ EH  +   DDD
Sbjct: 9   KSKISFSVESLLSKKEDEEVEHRLSDRDDDD 39


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
          protein 19 protein.
          Length = 119

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 12 ISEILASRNNNKDEANTVIDKG 77
          + EILAS    K+  N ++D+G
Sbjct: 28 VDEILASERLLKNYFNCIMDRG 49


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -2

Query: 618 FQLSPPRRHGLAQTPQFGQQRQIQLTQAGH 529
           F ++P RR+       F      QLT  GH
Sbjct: 336 FTITPGRRYRFRMINSFASVCPAQLTIQGH 365


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -2

Query: 618 FQLSPPRRHGLAQTPQFGQQRQIQLTQAGH 529
           F ++P RR+       F      QLT  GH
Sbjct: 336 FTITPGRRYRFRMINSFASVCPAQLTIQGH 365


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 653 PHPYTTSGHSPATELTN 703
           P P TTS  SPA+  +N
Sbjct: 34  PPPATTSSGSPASVASN 50


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,990
Number of Sequences: 336
Number of extensions: 2828
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)