Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120184.Seq
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    30   0.28 
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    27   2.0  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    27   2.0  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   2.6  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   3.5  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.5  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    26   4.6  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   6.1  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   8.0  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   8.0  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   8.0  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    25   8.0  

>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +3

Query: 42  NKDEANTVIDKGKDSENITKENESHQMQLMKDMNNHEMLIYELQTMRSQS-DVPQSFETK 218
           NK  +  + +  +++EN  KE E  + QL K+   +  L+Y +  +RS++ ++    E +
Sbjct: 15  NKQTSLVLQNLKEETENQLKELEKKRSQLHKEEQINLQLVYAINDLRSKTKELKAENEKE 74

Query: 219 DIERNGHCDSEDLNKTTRCPL 281
           D   N    S DL    +  L
Sbjct: 75  DTFLNSFNASGDLTANKKIQL 95


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 702 LVSSVAGLCPEVVYGWGRWWCWS 634
           L S +A   P ++Y WGR + WS
Sbjct: 217 LYSMMATSLPAIIYSWGRNFMWS 239


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -3

Query: 512 TTVNQDRW-VVFRWMCLEGPEYP 447
           T +++D W ++ RW  L+GPE+P
Sbjct: 126 TIISRDVWDLLVRWYGLKGPEFP 148


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 263 NYAMSSVNSENVDDDYEHAYAYIVDDDLKSRLRKQF 370
           ++ M    ++NV++ YE +Y +   D+    L KQ+
Sbjct: 870 SFVMKQSENDNVEESYEESYKFFCIDERYHFLEKQW 905


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 341 HHQQYKRKRVHNHHPHFH 288
           HH  + R   H  HPHFH
Sbjct: 168 HHHPHTRPPHHPPHPHFH 185


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 399 PCNDIVLIARNCLRSLDFKSSST 331
           P N I L+A +CL S D  SSST
Sbjct: 127 PNNSIPLMANSCLLSADNSSSST 149


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 108 ESHQMQLMKDMNNHEMLIYELQTMRSQSDVPQSFETKDIERN 233
           E H++ ++  +N   ML    +T  + +DV     TKD E N
Sbjct: 74  EKHRITILTSVNKANMLTKLAETKGAAADVNILKRTKDAEEN 115


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 633 ESRRPFQLSPPRRHGLAQTP 574
           ES  PF +  P+R G  QTP
Sbjct: 481 ESNNPFPVMQPQRTGFGQTP 500


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1147

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 33   RNNNKDEANTVIDKGKDSENITKENESHQMQLMKDMNNHEMLIYELQTMRSQ 188
            R+  ++ A  V +    + N+ +EN + Q+QLMK +        +L  +R Q
Sbjct: 915  RSEIQEAAEKVSNLEFSNFNLKEENSNMQLQLMKALEQRNTGAKQLVNLRMQ 966


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = -3

Query: 377 SPGTVYVA*ILNHHQQ---YKRKRVHNHHPHFHCSQRTSRS 264
           SPG +    +LN       + + + HNHHP     + TS S
Sbjct: 520 SPGKLSSKGLLNSFSPISPFSKSKSHNHHPSSQVEKSTSNS 560


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 423 SVASRKTIRILRTLQTHPTKNHPPILI--HSRLSQERNGQPASVGSVAVVRIVESER 587
           +V S   +  L T+Q+   K+H P+L+   S ++ ++  +      + VVR+    R
Sbjct: 421 TVTSASVVYHLATMQSRKRKSHSPVLVCAPSNVAVDQLAEKIHRTGLRVVRVAAKSR 477


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 201 QSFETKDIERNGHCDSEDLNKTTRCP 278
           Q  ++KD ++ G+ D E + K +RCP
Sbjct: 291 QYVKSKDGKKPGYLDDETVPKGSRCP 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,394
Number of Sequences: 5004
Number of extensions: 44743
Number of successful extensions: 186
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)