Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120184.Seq
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009...    31   1.2  
04_01_0310 + 4197835-4197875,4197994-4198924                           30   1.6  
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316...    29   3.6  
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880...    29   3.6  
04_04_1686 + 35362454-35362781,35362891-35363165,35363770-35363880     29   4.8  
08_02_0202 - 14202996-14203241,14203630-14203823,14203947-142045...    28   6.3  
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852...    28   6.3  
06_02_0233 + 13315579-13316046                                         28   8.4  

>03_06_0365 -
           33399422-33399925,33400470-33400583,33400762-33400929,
           33401305-33401547,33402148-33402231,33402323-33403098,
           33404423-33404636
          Length = 700

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 602 GGDSWNGRRDSDQHHQRPHPYTTSGHSPATEL 697
           GG  WN R   D+  + P+P+  S    ATE+
Sbjct: 175 GGGGWNSRPGWDRRDREPNPFANSEAEEATEV 206


>04_01_0310 + 4197835-4197875,4197994-4198924
          Length = 323

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = +3

Query: 87  ENITKENESHQMQLMKDMNNHEMLIYELQTMRSQS 191
           E   K ++S ++++MK++ +H M + E+QT ++ +
Sbjct: 251 EAAAKASDSEKVEIMKELEDHNMKVEEIQTNKNMT 285


>03_06_0656 -
           35330109-35331011,35331154-35331360,35331455-35331632,
           35331726-35332221,35332889-35333033
          Length = 642

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 593 WRRGGDSWNGRRDSDQHHQRPHPYTTSGHSPAT 691
           +RRGG+  NGR +SD      H    +G  PAT
Sbjct: 519 YRRGGNQGNGRNESDSILSPAHFPALTGTIPAT 551


>02_05_0096 +
           25785995-25786311,25786716-25786776,25787825-25788059,
           25788292-25788530,25789700-25789951,25790043-25790223,
           25790864-25790952,25791269-25791342,25791481-25791584,
           25791919-25791957,25792324-25792436
          Length = 567

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 341 HHQQYKRKRVHNHHPHFHCSQ 279
           HHQQY +++   HH H H  Q
Sbjct: 44  HHQQYVQRQPQQHHHHNHHQQ 64


>04_04_1686 + 35362454-35362781,35362891-35363165,35363770-35363880
          Length = 237

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 605 GDSWNGRRDSDQHHQRPHPYTTSGHSPA 688
           G S+  R DS +HH RP P+ +  +S A
Sbjct: 73  GSSFLQRLDSSRHHLRPAPHDSDANSDA 100


>08_02_0202 -
           14202996-14203241,14203630-14203823,14203947-14204559,
           14205422-14205535
          Length = 388

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 78  KDSENITKENESHQMQLMKDMNNHEMLIYELQTMRSQSDVPQSFETKDIERNGH 239
           +D  N+    +   + +M D   HEM+I +    R + D+P   + +   RN H
Sbjct: 14  QDYRNLDDSQKHFLLTMMGDFQ-HEMIIPKEFVQRLKGDIPGEIQLETRNRNSH 66


>02_03_0074 +
           14781763-14784191,14784888-14784978,14785180-14785230,
           14785882-14785947,14786509-14786610
          Length = 912

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 344 NHHQQYKRKRVHNHHPHFHCSQRTSRSFVQIFRIAMSISFY 222
           +HH Q ++ + H+HH H H   R   S    +  A  +S +
Sbjct: 158 HHHSQPQQPQSHHHH-HHHSGSRKRHSMPPAYTAAEPVSHH 197


>06_02_0233 + 13315579-13316046
          Length = 155

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 587 RPWRRGGDSWNGRRDSDQHHQRPHPYTTS 673
           RP  R G++W  R  S    +RPHP  T+
Sbjct: 44  RPSPRYGEAWQSRTASRGRGRRPHPAGTA 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,828,737
Number of Sequences: 37544
Number of extensions: 321943
Number of successful extensions: 1216
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)