Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120184.Seq
(709 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 30 1.6
SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_38258| Best HMM Match : Sec7 (HMM E-Value=5.1e-22) 29 2.8
SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09) 29 2.8
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9) 29 2.8
SB_16070| Best HMM Match : IncA (HMM E-Value=0.43) 29 2.8
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_34413| Best HMM Match : Myosin_head (HMM E-Value=0) 29 4.9
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_56807| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 28 6.5
SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5) 28 6.5
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 28 6.5
SB_38058| Best HMM Match : TP2 (HMM E-Value=0.072) 28 8.5
SB_18956| Best HMM Match : SCAN (HMM E-Value=3.6) 28 8.5
SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18) 28 8.5
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 28 8.5
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 30.3 bits (65), Expect = 1.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 344 NHHQQYKRKRVHNHHPHFH 288
+HH + +R+R H+HH H H
Sbjct: 237 HHHHRRRRRRRHHHHHHHH 255
Score = 28.3 bits (60), Expect = 6.5
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 344 NHHQQYKRKRVHNHHPHFHCSQRTSR 267
+HH++ +R+R H+HH H + +R
Sbjct: 238 HHHRRRRRRRHHHHHHHHRYAMLINR 263
Score = 27.9 bits (59), Expect = 8.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 344 NHHQQYKRKRVHNHHPHFH 288
+HH ++R+R HH H H
Sbjct: 235 HHHHHHRRRRRRRHHHHHH 253
>SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 702 LVSSVAGLCPEVVYGWGRWWCWSESRRPFQLSPPRR 595
L+S G P V + W R +C S RP+ SP R
Sbjct: 82 LLSLTRGPAPTVTHSWSRPYCHSPVDRPYCYSPVDR 117
>SB_38258| Best HMM Match : Sec7 (HMM E-Value=5.1e-22)
Length = 237
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 368 TVYVA*ILNHHQQYKRKRVHNHHPHFH 288
T+ +A ++HH Y +H+HH H+H
Sbjct: 163 TIVIA--IHHHHYYHHHLLHHHHHHWH 187
>SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09)
Length = 304
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 368 TVYVA*ILNHHQQYKRKRVHNHHPHFH 288
T+ +A ++HH Y +H+HH H+H
Sbjct: 148 TIVIA--IHHHHYYHHHLLHHHHHHWH 172
>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
Length = 138
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -3
Query: 344 NHHQQYKRKRVHNHHPHFHCSQRTSRSFVQIFRIAMSI 231
+HH Q+ + H+HH H H Q+ I I + I
Sbjct: 48 HHHHQHNHHQHHHHHNHHHHHQQHHHHHHHIINIIVII 85
>SB_16070| Best HMM Match : IncA (HMM E-Value=0.43)
Length = 895
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -2
Query: 654 GRWWCW--SESRRPFQLSPPRRHGLAQTPQFGQQRQIQ 547
GR WC S S R F+ SPP+R+ Q QQR ++
Sbjct: 463 GRIWCQPDSHSLRCFERSPPKRYVGVLDQQLVQQRLVE 500
>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2520
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +3
Query: 3 EMLISEILASRNNNKDEANTVIDKGK-DSENITKEN-ESHQMQLMKDMNNHEMLIYELQT 176
E + E++ + + ++ I + + +SEN KE E+HQ ++ + N+HE + E+
Sbjct: 1097 EKRLEELIQQHESEMEGVDSRIQQARLESENNFKEILETHQREMEEIRNSHENKMQEM-- 1154
Query: 177 MRSQSDVPQSFETKDIERNGHCDSEDL 257
+++ + + KDI + +SE L
Sbjct: 1155 --AENHASELAQMKDIYEKQNRESEKL 1179
>SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1263
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/80 (23%), Positives = 29/80 (36%)
Frame = +3
Query: 36 NNNKDEANTVIDKGKDSENITKENESHQMQLMKDMNNHEMLIYELQTMRSQSDVPQSFET 215
NNN + N K ++ N N KD NN+ + S SD + +
Sbjct: 143 NNNSNNQNQQQQKDDNNNNNKSNNNDDDKNNSKDDNNNNN-GNKNSNNNSDSDYNNNKDN 201
Query: 216 KDIERNGHCDSEDLNKTTRC 275
D E + D +N + C
Sbjct: 202 NDDENSNSIDENSINNSQGC 221
>SB_34413| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 650
Score = 28.7 bits (61), Expect = 4.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -3
Query: 350 ILNHHQQYKRKRVHNHHPHFH 288
I++HH ++R+R H H+H
Sbjct: 625 IIHHHHHHRRRRRRRRHHHYH 645
>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 36 NNNKDEANTVIDKGKDSENITKENES 113
N NKD+ DK K+++N TKEN++
Sbjct: 514 NENKDKTKENKDKTKENKNKTKENKT 539
>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3213
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +3
Query: 12 ISEILASRNNNKDEANTVIDKGKDSENITKENESHQMQLMKDMNNHEMLIYELQTMRSQS 191
+ E + S KD A + GKD E + + HQM ++ + + Q + S S
Sbjct: 315 VCEEMRSWIQEKDAALCKEELGKDIETVRAQLRRHQMSWSAELKESFISAEDPQDIASAS 374
Query: 192 DVPQSFETK 218
++ Q E K
Sbjct: 375 ELIQQHEEK 383
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 417 RVSVASRKTIRILRTLQTHPTKNHPPILIHSRLSQE-RNGQPASVGSVAVVRIVESERG 590
RV R+T+R R HP + P I R++QE R G+P S + V+ + E G
Sbjct: 1454 RVESQERQTMRDTRP--RHPDELRPDIRHDIRVAQERREGRPDSKDATRVMHLHEPRAG 1510
>SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 33 RNNNKDEANTVIDKGKDSENITKENESHQMQLMKDMNNHE 152
+NNN D N D + ENI +NE + D NN++
Sbjct: 77 KNNNDDNNNKTNDNDTNDENINDDNEKN----TNDKNNND 112
>SB_56807| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 36 NNNKDEANTVIDKGKD-SENITKENESHQMQLMKDMNNHEMLIYELQTMRS 185
+NNKD N + KD + N K N ++ D N ++ + + TMR+
Sbjct: 22 DNNKDNDNNNNNNDKDNNNNKDKNNNNNDKNNNNDKNKNKTMTMTMTTMRT 72
>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
Length = 2748
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 27 ASRNNNKDEANTVIDKGKDSENITKENESHQMQLMKDMNN 146
AS +NN E N VI G++ + +EN Q Q+ + NN
Sbjct: 1138 ASDSNNPGEDNQVISGGQEEWDTGEENLVSQTQINDNENN 1177
>SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)
Length = 260
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -3
Query: 347 LNHHQQYKRKRVHNHH-PHFHCSQRTSRSFVQIFRIA-MSISFYVLRF 210
L HH Q R R H+H + C Q + + I ++ISF + F
Sbjct: 166 LQHHHQRHRHRQHHHQLQYIQCHQHHYSIIISVIDIINITISFSIFSF 213
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Frame = -3
Query: 347 LNHHQQYKRKRVHNHH---PHFHCSQRTSR---SFVQIFRIAMSISFY 222
L HH Q +R R H HH + C Q S + I I +S S +
Sbjct: 87 LQHHHQRQRHRHHQHHHQLQYIQCHQHHYSIIISVIDIINITISFSIF 134
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -3
Query: 374 PGTVYVA*ILNHHQQYKR-KRVHNHHPHFH 288
P T+ + H Q Y R +R H+HH H H
Sbjct: 179 PSTIIIILRHRHRQHYNRHRRHHHHHRHRH 208
>SB_38058| Best HMM Match : TP2 (HMM E-Value=0.072)
Length = 399
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +3
Query: 27 ASRNNNKDEANTVIDKGKDSENITKENESHQMQLMKDMNNHEMLIYELQTM 179
+S+NNN + N D G+D N +N S D +++ + T+
Sbjct: 339 SSKNNNNNNKNNDEDDGEDDGNNDNDNNSSNSNSSNDDGDNDNIFINTLTI 389
>SB_18956| Best HMM Match : SCAN (HMM E-Value=3.6)
Length = 337
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 411 SGGRPCNDIVLIARNCLRSLDFKSSS 334
+GGR CN++ + A N LR L K S
Sbjct: 283 TGGRSCNELTVPAGNVLRKLQDKCKS 308
>SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 910
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -2
Query: 417 FGSGGRPCNDIVLIARNCLRSLDFK 343
F S G CN I L NC+RS D K
Sbjct: 63 FFSSGCLCNKICLRLHNCVRSADIK 87
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.9 bits (59), Expect = 8.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 344 NHHQQYKRKRVHNHHPHFH 288
+HH Q+ + H+HH H H
Sbjct: 262 HHHHQHNHHQHHHHHHHHH 280
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = -3
Query: 344 NHHQQYKRKRVHNHHPHFHCSQRTSRSFVQIFRIAMSI 231
NHHQ + H+H+ H H Q I I + I
Sbjct: 268 NHHQHHHHHHHHHHNHHHHHQQHHHHHHHHIINIIVII 305
>SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)
Length = 1051
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/52 (25%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +3
Query: 27 ASRNNNKDEANTVIDKGKDSEN-ITKENESHQMQLMKDMNNHEMLIYELQTM 179
+S + +N + +G + E +++ENE H ++L + +++ E I +L+T+
Sbjct: 141 SSHADKPTRSNQIRQQGSNFETKLSRENEEHLIELKEKLHDAEKEIAQLKTI 192
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = -3
Query: 344 NHHQQYKRKRVH---NHHPHFHCSQRTSRSFVQI 252
+HHQ+++ + H +HH H H R R F I
Sbjct: 324 HHHQRHRHRHRHRHRHHHHHHHEYNRRHRYFTDI 357
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,315,920
Number of Sequences: 59808
Number of extensions: 377875
Number of successful extensions: 1659
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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