Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120184.Seq
(709 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77659-8|CAB01170.1| 958|Caenorhabditis elegans Hypothetical pr... 31 0.81
Z77657-11|CAB01153.1| 958|Caenorhabditis elegans Hypothetical p... 31 0.81
Z29116-3|CAA82372.1| 485|Caenorhabditis elegans Hypothetical pr... 31 0.81
U20902-1|AAA84393.1| 485|Caenorhabditis elegans cyclin A protein. 31 0.81
AF295093-1|AAG03081.1| 958|Caenorhabditis elegans bimC kinesin ... 31 0.81
AB024428-1|BAC19818.1| 958|Caenorhabditis elegans kinesin like ... 31 0.81
U97194-4|AAP13781.1| 521|Caenorhabditis elegans Cyclin e protei... 29 3.3
U97194-3|AAK68235.1| 524|Caenorhabditis elegans Cyclin e protei... 29 3.3
AF520616-1|AAM78547.1| 524|Caenorhabditis elegans cyclin E prot... 29 3.3
AF058331-1|AAC63505.1| 524|Caenorhabditis elegans cyclin E prot... 29 3.3
AC024205-5|ABA00164.1| 97|Caenorhabditis elegans Hypothetical ... 29 4.3
Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical pr... 28 5.7
U41995-13|AAA83469.1| 223|Caenorhabditis elegans Hypothetical p... 27 9.9
>Z77659-8|CAB01170.1| 958|Caenorhabditis elegans Hypothetical
protein F23B12.8 protein.
Length = 958
Score = 31.1 bits (67), Expect = 0.81
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 96 TKENESHQMQLMKDMNNHEMLIYELQTMRSQSDVPQSFETKDIER-NGHCDSEDLNKTTR 272
TK E+H+ Q++ D NN E + L T+ + V QS E +E + + +D KT +
Sbjct: 705 TKVAENHEKQVIADQNNQETI---LDTLNTAETVVQSLEDNIVETCDVKQEMDDTKKTLK 761
>Z77657-11|CAB01153.1| 958|Caenorhabditis elegans Hypothetical
protein F23B12.8 protein.
Length = 958
Score = 31.1 bits (67), Expect = 0.81
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 96 TKENESHQMQLMKDMNNHEMLIYELQTMRSQSDVPQSFETKDIER-NGHCDSEDLNKTTR 272
TK E+H+ Q++ D NN E + L T+ + V QS E +E + + +D KT +
Sbjct: 705 TKVAENHEKQVIADQNNQETI---LDTLNTAETVVQSLEDNIVETCDVKQEMDDTKKTLK 761
>Z29116-3|CAA82372.1| 485|Caenorhabditis elegans Hypothetical
protein ZK507.6 protein.
Length = 485
Score = 31.1 bits (67), Expect = 0.81
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = +3
Query: 18 EILASRNNNKDEANTVIDKG-KDSENITKENES--HQMQL-MKDMNNHEMLIYELQTMRS 185
++ + K+ ++ +D KDS I E+ + H+++ M++ + E L ++ R
Sbjct: 69 KVFEDQEPEKENSSENVDATEKDSNVIPAEDNNMIHELERKMEEKSRAEKLKFKFMQTRD 128
Query: 186 QSDVPQSFETKDIERNGHCDSEDLNKTT 269
SD+ F E + CD +D +K +
Sbjct: 129 NSDITSRFSEPPSEFSVLCDDDDCDKVS 156
>U20902-1|AAA84393.1| 485|Caenorhabditis elegans cyclin A protein.
Length = 485
Score = 31.1 bits (67), Expect = 0.81
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = +3
Query: 18 EILASRNNNKDEANTVIDKG-KDSENITKENES--HQMQL-MKDMNNHEMLIYELQTMRS 185
++ + K+ ++ +D KDS I E+ + H+++ M++ + E L ++ R
Sbjct: 69 KVFEDQEPEKENSSENVDATEKDSNVIPAEDNNMIHELERKMEEKSRAEKLKFKFMQTRD 128
Query: 186 QSDVPQSFETKDIERNGHCDSEDLNKTT 269
SD+ F E + CD +D +K +
Sbjct: 129 NSDITSRFSEPPSEFSVLCDDDDCDKVS 156
>AF295093-1|AAG03081.1| 958|Caenorhabditis elegans bimC kinesin
BMK-1 protein.
Length = 958
Score = 31.1 bits (67), Expect = 0.81
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 96 TKENESHQMQLMKDMNNHEMLIYELQTMRSQSDVPQSFETKDIER-NGHCDSEDLNKTTR 272
TK E+H+ Q++ D NN E + L T+ + V QS E +E + + +D KT +
Sbjct: 705 TKVAENHEKQVIADQNNQETI---LDTLNTAETVVQSLEDNIVETCDVKQEMDDTKKTLK 761
>AB024428-1|BAC19818.1| 958|Caenorhabditis elegans kinesin like
protein KLP-14 protein.
Length = 958
Score = 31.1 bits (67), Expect = 0.81
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 96 TKENESHQMQLMKDMNNHEMLIYELQTMRSQSDVPQSFETKDIER-NGHCDSEDLNKTTR 272
TK E+H+ Q++ D NN E + L T+ + V QS E +E + + +D KT +
Sbjct: 705 TKVAENHEKQVIADQNNQETI---LDTLNTAETVVQSLEDNIVETCDVKQEMDDTKKTLK 761
>U97194-4|AAP13781.1| 521|Caenorhabditis elegans Cyclin e protein
1, isoform b protein.
Length = 521
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +3
Query: 51 EANTVIDKGKDSENITKENESHQMQLMKDMNNHEMLIYELQTMRSQSDVPQSFETKDIER 230
E V DK S+N+ + ESH+M +++ + E I + + V E ++IE
Sbjct: 125 EEEEVFDKSSSSDNLAESEESHEMVRLEERQDIEEEIEDDFDDEEEDVVNDKEEYEEIES 184
Query: 231 NGHCD 245
D
Sbjct: 185 EDEDD 189
>U97194-3|AAK68235.1| 524|Caenorhabditis elegans Cyclin e protein
1, isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +3
Query: 51 EANTVIDKGKDSENITKENESHQMQLMKDMNNHEMLIYELQTMRSQSDVPQSFETKDIER 230
E V DK S+N+ + ESH+M +++ + E I + + V E ++IE
Sbjct: 128 EEEEVFDKSSSSDNLAESEESHEMVRLEERQDIEEEIEDDFDDEEEDVVNDKEEYEEIES 187
Query: 231 NGHCD 245
D
Sbjct: 188 EDEDD 192
>AF520616-1|AAM78547.1| 524|Caenorhabditis elegans cyclin E
protein.
Length = 524
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +3
Query: 51 EANTVIDKGKDSENITKENESHQMQLMKDMNNHEMLIYELQTMRSQSDVPQSFETKDIER 230
E V DK S+N+ + ESH+M +++ + E I + + V E ++IE
Sbjct: 128 EEEEVFDKSSSSDNLAESEESHEMVRLEERQDIEEEIEDDFDDEEEDVVNDKEEYEEIES 187
Query: 231 NGHCD 245
D
Sbjct: 188 EDEDD 192
>AF058331-1|AAC63505.1| 524|Caenorhabditis elegans cyclin E
protein.
Length = 524
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +3
Query: 51 EANTVIDKGKDSENITKENESHQMQLMKDMNNHEMLIYELQTMRSQSDVPQSFETKDIER 230
E V DK S+N+ + ESH+M +++ + E I + + V E ++IE
Sbjct: 128 EEEEVFDKSSSSDNLAESEESHEMVRLEERQDIEEEIEDDFDDEEEDVVNDKEEYEEIES 187
Query: 231 NGHCD 245
D
Sbjct: 188 EDEDD 192
>AC024205-5|ABA00164.1| 97|Caenorhabditis elegans Hypothetical
protein Y73C8B.5 protein.
Length = 97
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 150 EMLIYELQTMRSQSDVPQSFETKDIERNGHCDSEDLNKTTR 272
E L Q S + ++F DI+RNG D ++L TR
Sbjct: 51 EPLFSNFQARLSAEGIRKTFRYTDIDRNGQVDLDELIDVTR 91
>Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical
protein T04C10.4 protein.
Length = 208
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 341 HHQQYKRKRVHNHHPHFHCSQRTSRSF 261
H+Q + + HNHH H H S +S+
Sbjct: 18 HNQTHSTPQYHNHHHHHHQSPTYPQSY 44
>U41995-13|AAA83469.1| 223|Caenorhabditis elegans Hypothetical
protein E02C12.12 protein.
Length = 223
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 87 ENITKENESHQM-QLMKDMNNHEMLIYELQTMRSQSDVPQSFETKDIERNGHCDSEDL 257
EN E + +++ +L++D +N E+ Y+L + D+P TK G+ D+ DL
Sbjct: 95 ENGFSEEKLNELGKLIRDGHNREVATYKLLEKMNHPDIPY---TKVYGLKGYSDANDL 149
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,082,258
Number of Sequences: 27780
Number of extensions: 269075
Number of successful extensions: 1189
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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