Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120184.Seq
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.93 
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              24   1.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = +2

Query: 596 RRGGDSWNGRRDSDQHHQRPHPYTTSGHSPATELTNIT 709
           R G  SW G       H+     +T+G  P    T +T
Sbjct: 701 RSGSHSWEGDSFKVSKHEEVSRTSTAGQFPTNVATTVT 738


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 261 CSDLQNRNVHFFLCPSFQNFAVRQTVT 181
           CS + + NVH  +   FQ F   +T+T
Sbjct: 104 CSPISDANVHIKISKIFQCFMKYKTIT 130


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 657 WGRWWCWSESRRPFQL 610
           WG  W W+E R+ + L
Sbjct: 169 WGSAWQWNEERKQYYL 184


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 399  ACPHYRRVSVASRKTIRILRTLQTHPTKNHP 491
            A PH  ++++ +  T  +   ++ HPT N P
Sbjct: 1365 APPHSPQITLTATTTNSLTMKVRPHPTDNAP 1395


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 228 FLCPSFQNFAVRQTVTASFVVHKSTSRDCSC 136
           F C   Q FA  +  +A  + H  +SR+ SC
Sbjct: 421 FRCKPSQRFASGRYYSAYSLHHVRSSRESSC 451


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 590 PWRRGGDSWNGR 625
           PWR  G+ WN R
Sbjct: 135 PWRTCGNPWNTR 146


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 590 PWRRGGDSWNGR 625
           PWR  G+ WN R
Sbjct: 188 PWRTCGNPWNTR 199


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +3

Query: 102 ENESHQMQLMKDMNNHEMLIYELQTMRSQSDVPQSFETKDIERN 233
           E++S   Q +  +  +E  +  + +M+ + +VPQS    + +RN
Sbjct: 330 EHQSLDRQNIDVVARNEDTLQMVVSMKIKQNVPQSGRVNNTQRN 373


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 178 CGHSLTYRKVLKR 216
           CG +LT+ ++LKR
Sbjct: 339 CGITLTFHEILKR 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,914
Number of Sequences: 438
Number of extensions: 3021
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)