Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120184.Seq
(709 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g78230.1 68414.m09116 leucine-rich repeat family protein 31 0.75
At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containi... 29 3.0
At5g26850.1 68418.m03203 expressed protein 29 4.0
At1g71500.1 68414.m08265 Rieske [2Fe-2S] domain-containing prote... 29 4.0
At1g62935.1 68414.m07106 hypothetical protein 29 4.0
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 29 4.0
At5g55020.1 68418.m06853 myb family transcription factor (MYB120... 28 5.3
At1g69810.1 68414.m08032 WRKY family transcription factor 28 5.3
At1g22060.1 68414.m02759 expressed protein 28 5.3
At4g18960.1 68417.m02793 floral homeotic protein AGAMOUS (AG) co... 28 7.0
At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 fam... 27 9.2
At1g19700.1 68414.m02457 homeobox-leucine zipper family protein ... 27 9.2
>At1g78230.1 68414.m09116 leucine-rich repeat family protein
Length = 676
Score = 31.1 bits (67), Expect = 0.75
Identities = 18/77 (23%), Positives = 35/77 (45%)
Frame = +3
Query: 39 NNKDEANTVIDKGKDSENITKENESHQMQLMKDMNNHEMLIYELQTMRSQSDVPQSFETK 218
NNKD + + + D E+ + +S + K + HE + +++ +D ++ +
Sbjct: 140 NNKD--SPIKHESYDGEDERDDKDSTNREFSK-FHVHERAVESVKSKEEVTDTSENGDDN 196
Query: 219 DIERNGHCDSEDLNKTT 269
D + GH L KTT
Sbjct: 197 DEDEGGHVSDPGLGKTT 213
>At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587, post-transcriptional control of
chloroplast gene expression CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 918
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 259 FRSSESQCPFLSMSFVSKLCGTSDCDRIV 173
F + L +SF SKLCG+ DC I+
Sbjct: 175 FSGDDEMFHSLMLSFESKLCGSDDCTYII 203
>At5g26850.1 68418.m03203 expressed protein
Length = 919
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 512 FISRKKWPACVSWICRCCP 568
FISR +PAC S +C CCP
Sbjct: 3 FISRNVFPACES-MCICCP 20
>At1g71500.1 68414.m08265 Rieske [2Fe-2S] domain-containing protein
contains Pfam profile PF00355: iron-sulfur
cluster-binding protein, rieske family
Length = 287
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 24 LASRNNNKDEANTVIDKGKDSENITKENE 110
L + N N DE ++D+G + TK+NE
Sbjct: 216 LTATNVNVDEVRMIVDEGSEGFGFTKKNE 244
>At1g62935.1 68414.m07106 hypothetical protein
Length = 176
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/24 (62%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 290 ENVDDDYEHAYAYIVDDD-LKSRL 358
EN DDD HAY VDDD L SR+
Sbjct: 131 ENRDDDDNHAYGDDVDDDTLTSRI 154
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +3
Query: 27 ASRNNNKDEANTVIDKGKDSENITKEN--ESHQMQLMKDMNNHEMLIYELQTMRSQSDVP 200
+SR+ + + +V D G+ E T+E E Q +L +++ + E Q ++ + +
Sbjct: 240 SSRHEDSPKRKSVEDNGEKKEKKTREEELEDEQKKLDEEVEKRRRRVQEWQELKRKKEEA 299
Query: 201 QSFETKDIERN 233
+S D + N
Sbjct: 300 ESESKGDADGN 310
>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 523
Score = 28.3 bits (60), Expect = 5.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 347 LNHHQQYKRKRVHNHHPHFHCSQR 276
L+ H +++++ HNHH H H Q+
Sbjct: 147 LHPHPHHQQQQQHNHHHHHHQQQQ 170
>At1g69810.1 68414.m08032 WRKY family transcription factor
Length = 387
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +3
Query: 87 ENITKENESHQMQLMKDMNNHEMLIYELQTMRSQSDVPQSFETKDIERNGHCDSEDLNKT 266
E + +ENE ++ L +NN+ L ++ + Q S E I+R + D++ +
Sbjct: 34 EKVREENEKLKLLLSTILNNYNSLQMQVSKVLGQQQGASSMELDHIDRQDENNDYDVDIS 93
Query: 267 TR 272
R
Sbjct: 94 LR 95
>At1g22060.1 68414.m02759 expressed protein
Length = 1999
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/89 (19%), Positives = 46/89 (51%)
Frame = +3
Query: 9 LISEILASRNNNKDEANTVIDKGKDSENITKENESHQMQLMKDMNNHEMLIYELQTMRSQ 188
L++++ + ++ K E N + + E +T E + + L+++ + + + L+ M ++
Sbjct: 1265 LLADLDSLKSELKIERNLRNNLDRRVEELTSELDEKHL-LLENFDLQKSQVELLEKMVAE 1323
Query: 189 SDVPQSFETKDIERNGHCDSEDLNKTTRC 275
+ +SF+ + RN H +S + + +C
Sbjct: 1324 LESEKSFQRLEYVRNAHRESSFIEELFQC 1352
>At4g18960.1 68417.m02793 floral homeotic protein AGAMOUS (AG)
contains an ACG start codon (Riechmann, Ito, and
Meyerowitz, Mol Cell Biol, 1999); supported by cDNA
gi|16155|emb|X53579
Length = 252
Score = 27.9 bits (59), Expect = 7.0
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +3
Query: 3 EMLISEILASRNNNKDEAN-TVIDKGKDSENITKENESHQMQLMKDMNNHEMLIYELQTM 179
E+L SEI + D N I + K +EN E + + LM +N+E L+ QT
Sbjct: 160 ELLFSEIDYMQKREVDLHNDNQILRAKIAEN---ERNNPSISLMPGGSNYEQLMPPPQTQ 216
Query: 180 RSQSDVPQSFETKDIERNGH 239
D F+ ++ N H
Sbjct: 217 SQPFDSRNYFQVAALQPNNH 236
>At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 794
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -3
Query: 341 HHQQYKRKRVHNHHPHFH 288
HH KR H+HH H H
Sbjct: 103 HHNPLSSKRHHHHHNHHH 120
>At1g19700.1 68414.m02457 homeobox-leucine zipper family protein
similar to BEL1-like homeodomain 1 (GI:13877517)
[Arabidopsis thaliana]; similar to homeodomain protein
GI:7239157 from (Malus domestica); contains weak hit to
Pfam profile PF00046: Homeobox domain
Length = 538
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 48 DEANTVIDKGKDSENIT-KENESHQMQLMKDMNNHEMLIY 164
DE+ +I K N T +E+ S Q Q ++ NN+ L Y
Sbjct: 424 DESELLISKSSQEPNSTNQEDSSSQQQQQQENNNNSNLAY 463
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,224,927
Number of Sequences: 28952
Number of extensions: 246852
Number of successful extensions: 1012
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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