Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120183.Seq
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    31   0.13 
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    29   0.51 
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   3.6  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    26   4.8  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   6.3  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   8.4  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    25   8.4  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   8.4  

>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -3

Query: 558 LRCRLKTTMSIGRPFFYHLFSVIKNEHKICQFGRVFHQIPHGR 430
           ++CR+K  M      ++ +FS +   +K+CQFGR+   I HG+
Sbjct: 20  VQCRIKEIMYWNICLYWDVFSKLIIYNKVCQFGRI--HIFHGK 60


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = +1

Query: 226  LQQIQHGPANAIVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNS---WY 396
            L+++Q       + + ++KN+   +  +     + K + +K  V+ N   IL NS   W 
Sbjct: 891  LRRLQDSAGRTSILYEKQKNLQASITEV---SKQLKSNSKKVTVLRNKLNILNNSLSKWK 947

Query: 397  TKIKQPEWPSSPAMWDLVKNTPELADFV 480
              IK+P   S P   D   N  +L   +
Sbjct: 948  CLIKKPSDFSEPVSMDFTSNDEQLVQLL 975


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +1

Query: 310  PVMQDERKMSKRKKKVINNNKYILFNSWYTK 402
            P++ + +K+S +  K++ +N Y   N W+ +
Sbjct: 1060 PILPNLQKLSTQYSKIVRDNDYGNVNCWFNR 1090


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +1

Query: 385 NSWYTKIKQPEWPSSPAMW-----DLVKNTPELADFVFIFDHTEKMVKKW 519
           +SW +KI  P+W  + A++     +     P LA  + + +H+ K   KW
Sbjct: 157 DSWPSKITLPKWVHADALFHSRCLESPFKDPVLAPVIDLCNHSSKSNAKW 206


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 321 LHDRHYVEDIVNVLFF 274
           L+DR YVE I+++LFF
Sbjct: 253 LYDRVYVEKILDILFF 268


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 220 ELLQQIQH-GPANAIVNFLEKKNINYILNVMPVMQDERKMSKRKKKVI 360
           +LL +  H  P++A +  LEKKN    L    +   E+K      K+I
Sbjct: 216 DLLPETNHYSPSHAFIRLLEKKNKLSTLFTQNIDNLEKKTGLSDNKII 263


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/46 (21%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +1

Query: 256 AIVNFLEK--KNINYILNVMPVMQDERKMSKRKKKVINNNKYILFN 387
           A++N  ++  ++IN++ +   +  ++ K +  K++V+   K +LF+
Sbjct: 443 ALINTFDRLSRSINFVDDFKQIYSEQHKPASFKRRVLRRIKQLLFS 488


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 337 SKRKKKVINNNKYILFN-SWYTKIKQPEWP-SSPAMWDLVKNTPEL 468
           S R++ V NNN   +FN S++ KI    +   +  +WD ++N  +L
Sbjct: 232 SLRERFVDNNNSDYIFNVSYHKKIPADGFSLYTREIWDTIENNKDL 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,027
Number of Sequences: 5004
Number of extensions: 66997
Number of successful extensions: 197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)