Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120183.Seq
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenase...    30   1.5  
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z82287-3|CAB05313.3|  772|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenases,
           short chain protein9 protein.
          Length = 319

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 29/127 (22%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
 Frame = +1

Query: 88  IIKNTSGSFQRFTKIKHGKHAGATIFYINCGRVQK*KVVE*TGIELLQ----QIQHGPAN 255
           I+   S    R   ++ G+ AGAT+ YI  GR  +  +    G+  L+    +I      
Sbjct: 9   IVTGASRGIGRGIALQLGE-AGATV-YIT-GRKPEESLNSKVGLSGLEATADEITKRGGK 65

Query: 256 AIVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPA 435
            I  F++ +N+  + N   V++ E +    +  ++ NN Y    +    + +P + + P 
Sbjct: 66  GIARFVDHQNMEEVKNFFEVVEKEHQ---GQLDILVNNAYQGVTAISENMGKPFYETDPY 122

Query: 436 MWDLVKN 456
           +WD + N
Sbjct: 123 VWDTINN 129


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
            B0024.8 protein.
          Length = 1185

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
 Frame = +1

Query: 298  LNVMPVMQDERKMSKRKKKVINNNKYILFN--SWYTKIKQPEWPSSPAMWDLVKNTPELA 471
            ++++P M    K S  K++     +Y   +  ++ +K KQ E  + P +WD VKN+    
Sbjct: 1083 VSLLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNSAPDV 1142

Query: 472  DFVFIFDHTEKMVKKWPTDRHRRLQATTQQFQRAKKDRLRCL 597
            D      +  K + K   ++ + L   T +    +K +L  L
Sbjct: 1143 DNKKATQYLAKTLAKLIGEK-QLLDLATSELDPNRKKQLDAL 1183


>Z82287-3|CAB05313.3|  772|Caenorhabditis elegans Hypothetical
           protein ZK550.3 protein.
          Length = 772

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
 Frame = +1

Query: 424 SSPAMWDLVKNTPELADF-VFIFDHTEKMVKKWPTDRHRRLQATTQQFQRAKKDRLRCLP 600
           S  ++W+  + T   +DF + I++  ++  K W  D ++++      F+RAK D   C  
Sbjct: 620 SRASLWETYR-TLFWSDFDLSIYEMEDRKQKFW-LDMYKQMYEEYFPFKRAKNDYQPCSF 677

Query: 601 TQIWQN*KRAAKCAIKLYSEFYSL-LNETFN 690
           T I+      +    KL++E  +L ++ETF+
Sbjct: 678 TPIFALQPHMSMYYRKLWAEMLALDIHETFD 708


>Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical
           protein T06E6.6 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 429 ATRPLGLLD--LSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHY 304
           A  PLG+L     VPT  Q  F+  N  ++   HF  V+ +R+Y
Sbjct: 72  AGTPLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114


>Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical
           protein F20E11.15 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
 Frame = -3

Query: 504 LFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVP---TVKQNVFIVV---NHLLLA 343
           LF++I +   IC+ G+  ++ P       L L+D+ +     V  ++F+ V   N+LL  
Sbjct: 188 LFAIILSLKLICKAGKTTNKDPTMNRANRLALIDVIIIFFFDVLLSIFLTVFDQNNLLTN 247

Query: 342 FGHFAFVLHD 313
            G FA VL +
Sbjct: 248 SGPFASVLRE 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,293,968
Number of Sequences: 27780
Number of extensions: 387839
Number of successful extensions: 1074
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)