Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120183.Seq
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36920.1 68418.m04425 expressed protein predicted protein, Ar...    30   1.8  
At4g22450.1 68417.m03243 hypothetical protein                          30   1.8  
At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide...    29   2.4  
At4g21660.1 68417.m03138 proline-rich spliceosome-associated (PS...    29   4.2  
At4g36010.1 68417.m05127 pathogenesis-related thaumatin family p...    28   5.5  
At2g17860.1 68415.m02069 pathogenesis-related thaumatin family p...    28   5.5  
At5g36870.1 68418.m04417 glycosyl transferase family 48 protein ...    28   7.3  
At2g04080.1 68415.m00391 MATE efflux family protein similar to h...    28   7.3  
At5g28320.1 68418.m03438 expressed protein This is likely a pseu...    27   9.6  
At2g24810.1 68415.m02968 pathogenesis-related thaumatin family p...    27   9.6  

>At5g36920.1 68418.m04425 expressed protein predicted protein,
           Arabidopsis thaliana; expression supported by MPSS
          Length = 82

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 619 NSAKFALVSTAVCLFLLAGIAALSLEDDDVDRSAIFLPSFQC 494
           N++   L+S  +CL  + G+   S+ DDD+  +    PS  C
Sbjct: 5   NTSHVLLLSLLLCLMFVIGLVEASIPDDDMGPAIYTPPSGSC 46


>At4g22450.1 68417.m03243 hypothetical protein 
          Length = 457

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 567 ASKKRQTAVLTNANLAE-LKESCEMRDKALFGVLQLVKRDIQ*QCC 701
           +SKKR  +V     +AE +K+S + RDK L    QL++   +  CC
Sbjct: 208 SSKKRSRSVQDEQGVAEVIKDSIKSRDKILSHKNQLIEMHPKFSCC 253


>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
           identical to like heterochromatin protein LHP1
           [Arabidopsis thaliana] GI:15625407; contains Pfam
           profile PF00385: 'chromo' (CHRromatin Organization
           MOdifier)
          Length = 445

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +1

Query: 403 IKQPEWPSSPAMWDLVKNTPELADFVFIFDHTEKMVKKWPTDRHRRLQATTQQFQRAKKD 582
           IK   WP +   W+ ++N   +AD   + D  E  +K     R R+ +      Q  KK 
Sbjct: 127 IKWRGWPETANTWEPLENLQSIAD---VIDAFEGSLKPGKPGRKRKRKYAGPHSQMKKKQ 183

Query: 583 RL 588
           RL
Sbjct: 184 RL 185


>At4g21660.1 68417.m03138 proline-rich spliceosome-associated (PSP)
           family protein similar to SP|Q13435 Splicing factor 3B
           subunit 2 (Spliceosome associated protein 145) (SAP 145)
           (SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa
           subunit) {Homo sapiens}; contains Pfam profiles PF04046:
           PSP, PF04037: Domain of unknown function (DUF382)
          Length = 584

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = +1

Query: 274 EKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSW-YTKIKQPEW-PSSPAMWDL 447
           EK+++   +N      D+ + ++ K+K I+N K  L       ++KQ    P    +WD 
Sbjct: 124 EKEDVKKKVNSDSDSDDDEQDNQNKEKGISNKKKKLQRRMKIAELKQVSARPDVVEVWDA 183

Query: 448 VKNTPELADFVFIFDHTEKMVKKWPTDR 531
               P+L  F+  + +T  + + W   R
Sbjct: 184 TSADPKLLVFLKSYRNTVPVPRHWSQKR 211


>At4g36010.1 68417.m05127 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 301

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 165 EDCCSGMFTMFDFCKPLKRPACILDDIFF*CPTAWQFVCDEDT 37
           E CCSG F   D CKP +      +     CP A+ +  D+ T
Sbjct: 196 EYCCSGAFGTPDTCKPSEYSQFFKNA----CPRAYSYAYDDGT 234


>At2g17860.1 68415.m02069 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 253

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 165 EDCCSGMFTMFDFCKPLKRPACILDDIFF--*CPTAWQFVCDEDT 37
           E CC+G F   D C+P +        +FF   CPTA+ +  D+ T
Sbjct: 195 EFCCNGAFGTPDTCQPSEY------SVFFKKTCPTAYSYAYDDGT 233


>At5g36870.1 68418.m04417 glycosyl transferase family 48 protein
            contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1862

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 660  LRIKLYRAFRSSLLILPNLRW*APQSVFFCSLELL 556
            +++ L+ AF +  + L   R   PQ VF C L L+
Sbjct: 1738 IKVSLFLAFMAIFITLMTCRLILPQDVFLCMLALI 1772


>At2g04080.1 68415.m00391 MATE efflux family protein similar to
           hypothetical protein GB:AAC27412; contains Pfam profile
           PF01554: Uncharacterized membrane protein family
          Length = 476

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 362 TTINTFCLTVGTLRSSSPSGLVA 430
           T++ + CLT+GTL    PSG+ A
Sbjct: 287 TSVLSICLTIGTLHYVIPSGVAA 309


>At5g28320.1 68418.m03438 expressed protein This is likely a
           pseudogene.
          Length = 967

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 415 EWPSSPAMWDLV--KNTPELADFVFIFDHTEKMVKKW 519
           EW     + D+V      ELAD V ++D  EK++ +W
Sbjct: 601 EWMKDEKLRDIVFCVRDNELADGVSVYDPLEKIIPRW 637


>At2g24810.1 68415.m02968 pathogenesis-related thaumatin family
           protein similar to thaumatin-like protein [Arabidopsis
           thaliana] GI:2435406; contains Pfam profile PF00314:
           Thaumatin family
          Length = 193

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 165 EDCCSGMFTMFDFCKPLKRPACILDDIFF*CPTAWQFVCD 46
           E CC+G F+  + C P K            CPTA+ +V D
Sbjct: 139 EYCCTGAFSKPETCPPTKYSKIFKGA----CPTAYSYVYD 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,919,169
Number of Sequences: 28952
Number of extensions: 342774
Number of successful extensions: 841
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)