Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120177.Seq
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0539 + 3952039-3952219,3952295-3952984,3953115-3953191,395...    31   0.79 
10_06_0127 - 11027692-11027826,11027925-11027993,11029925-110300...    31   1.0  
02_05_0633 - 30492742-30492987,30493082-30494194                       29   3.2  
02_02_0066 - 6501250-6501273,6502018-6502102,6502926-6503110           29   3.2  
04_01_0213 - 2692253-2694562                                           29   5.5  

>01_01_0539 +
           3952039-3952219,3952295-3952984,3953115-3953191,
           3953356-3953931
          Length = 507

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +3

Query: 390 PRHGLATVSHRIYGQNHRTQ---FAFVPAQEFYLHVYHHMGH 506
           P +        IYG +  TQ    A V AQE+Y H +HH+ H
Sbjct: 349 PEYATQAAGPAIYGAHPATQPHYTAAVAAQEYYHHHHHHLQH 390


>10_06_0127 -
           11027692-11027826,11027925-11027993,11029925-11030011,
           11030146-11030286
          Length = 143

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +2

Query: 527 HRRYGVYARQKQSRFCHAAVENDEG--AILQRIFHTTVRHVPRSLYERQKVSSFYHIELI 700
           HR Y V  R+  S F    V+NDE   AIL+ I H  V  + R      ++   +H+E +
Sbjct: 53  HRNYKVVYRRYASLFFLVGVDNDENELAILEFI-HLLVETMDRHFGNVCELDIMFHLEKV 111

Query: 701 EIALDK 718
              L++
Sbjct: 112 HFMLEE 117


>02_05_0633 - 30492742-30492987,30493082-30494194
          Length = 452

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 206 CNEKKAASAVSWRLAKRSCCICVRRRPQRRC 114
           C+ +KAA AV  + A R+C  C+RRR +  C
Sbjct: 3   CSSEKAAGAVGGKAA-RACDSCLRRRARWYC 32


>02_02_0066 - 6501250-6501273,6502018-6502102,6502926-6503110
          Length = 97

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 25/85 (29%), Positives = 35/85 (41%)
 Frame = +1

Query: 118 RRCGRRLTQIQHDRFASRHDTADAAFFSLQRQLFVVFVSSHRPFASSKSAHLTKLLSSQA 297
           R C RR +     R+AS H  A+ A  +  R L     SSHR       A    L+S+  
Sbjct: 12  RSC-RRYSTCYGSRYASHHLPANRALAAAVRLLSSQITSSHRRSQPPPPASRWSLISTFL 70

Query: 298 TYLYHFACLMKYKDIQKYEVQQLIE 372
             L   A L     IQ+ E   +++
Sbjct: 71  CLLKWIAPLEAPHQIQRIEQVDIVD 95


>04_01_0213 - 2692253-2694562
          Length = 769

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 480 LHVYHHMGHQHFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVLFYNVFF 623
           L ++H  G  +  S  ++D + +  +  + F MQ L T+ +L+ NVFF
Sbjct: 90  LLMFHAGGPDNITSYSLEDNILSW-RDMIGFFMQVLGTIYILYKNVFF 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,990,560
Number of Sequences: 37544
Number of extensions: 430825
Number of successful extensions: 1154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)