Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120177.Seq
(785 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_3743| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.61
SB_26790| Best HMM Match : DUF262 (HMM E-Value=4.8) 30 2.4
SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_51583| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.5) 29 4.3
SB_59618| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_526| Best HMM Match : GRP (HMM E-Value=8.5) 28 7.5
SB_49289| Best HMM Match : Homeobox (HMM E-Value=6e-30) 28 7.5
SB_9093| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_15383| Best HMM Match : Transposase_21 (HMM E-Value=0.53) 28 9.9
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 32.3 bits (70), Expect = 0.46
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = -1
Query: 470 LGWHERKLSSVVLSINSMRNCCKSMSGDALMAHSINCCTSYF*MSLYFIKHAKWY 306
LGWH RK + S S AH CC+ F S F+KH W+
Sbjct: 75 LGWHGRKTPNK--HETQEVKATSSPSTTEPFAHQCTCCSKKFNNSSRFLKHMTWH 127
>SB_3743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 31.9 bits (69), Expect = 0.61
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Frame = +1
Query: 253 SSKSAHLTKLLSSQAT---YLYHFACLMKYKDIQKYEVQQLI 369
S+KS + KLL ++ + YLYHF +K K+ +++E +Q+I
Sbjct: 306 SAKSGYNVKLLFTKLSKDLYLYHFTRYLKMKEERRHEGEQII 347
>SB_26790| Best HMM Match : DUF262 (HMM E-Value=4.8)
Length = 525
Score = 29.9 bits (64), Expect = 2.4
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Frame = +1
Query: 181 ADAAFFSLQRQLFVVFVSSHRPFASSKSAHLTKLLSSQATYLYHFACLMKYKDIQKYEVQ 360
A+AAFFSL+ +F+ + + SKS ++ S+ + L+ ++ Q + ++
Sbjct: 381 AEAAFFSLRMDVFLQTIL----YLGSKS--ISHSYSALTKFHKILKSLIPTEEAQIHALK 434
Query: 361 QLIEWAINASPDMDL----QQFRIEFMDKTTELNLRSCQPKSFTYTFTTIWDTSTFSV 522
L E+ N SP M + + R++ ++ T +N C+ S +T + W+ T ++
Sbjct: 435 TLKEFWCN-SPQMTIILVDKLIRMQVVECTAVINWLLCKDMSQDFTKSYTWELMTTTI 491
>SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1273
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 504 HQHFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVL 605
H ++S++IDD Y + ++ V+ ++ T KVL
Sbjct: 435 HGDYMSIVIDDKQYCNNSHGVNIVVLEMLTFKVL 468
>SB_51583| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.5)
Length = 55
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +2
Query: 401 TCNS--FA*NLWTKPQNSICVRASP 469
TC F ++W+ PQN+ICVR P
Sbjct: 17 TCKKGLFKMSVWSNPQNNICVRECP 41
>SB_59618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 575 HAAVENDEGAILQRIFHTTVRH 640
HA ++ D+G I + F TTVRH
Sbjct: 326 HAKIKRDKGLISNKEFKTTVRH 347
>SB_526| Best HMM Match : GRP (HMM E-Value=8.5)
Length = 149
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 469 KSFTYTFTTIWDTSTFSVSSSTIW 540
KSF T TIW T T ++ ++T W
Sbjct: 119 KSFRTTAATIWTTGTTAIRTATHW 142
>SB_49289| Best HMM Match : Homeobox (HMM E-Value=6e-30)
Length = 285
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +2
Query: 422 NLWTKPQNSICVRASPRVLLTRLPPYGTPALSQSHHRRYGVYARQKQSRFCHAAVENDEG 601
NL T+ Q+ V + +L R+P TP H GV+ R + + CH +
Sbjct: 53 NLRTRTQSLSAVAWTSTGILKRIP---TPKPHPDRHASRGVWVRDRLTHVCHCIEPTIKS 109
Query: 602 AILQ 613
++ Q
Sbjct: 110 SVSQ 113
>SB_9093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +1
Query: 196 FSLQRQLFVVFVSSHRPFASSKSAHLTKLLSSQATYLYHFACLMKYKDIQKYEVQQLIEW 375
FSL + L + S + F+ K + T L SSQA L+ + + Q ++ +L
Sbjct: 53 FSLHKPLVFTSLQSSQAFSLHKPSVFTSLQSSQAFSLHKPSVFTSLQSSQAFKEWRLCFE 112
Query: 376 AINASPD 396
A+ +P+
Sbjct: 113 AMEINPE 119
>SB_15383| Best HMM Match : Transposase_21 (HMM E-Value=0.53)
Length = 297
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 503 TPALSQSHHRRYGVYARQKQSRFCHAAVENDEGAILQRIFH 625
TPA ++ + GV K+ R CHA E + L+ FH
Sbjct: 131 TPASHEAAGFKEGVGLSFKKCRHCHATFEEMQSNFLEENFH 171
>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3408
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -3
Query: 114 YVSADTDADEPIIYFENITECLTDDQCDKFTYFA 13
YV+ D D I YF N E + DQ KF FA
Sbjct: 3294 YVAGIKDTDLHIEYFWNALENFSQDQLRKFIKFA 3327
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,058,876
Number of Sequences: 59808
Number of extensions: 536189
Number of successful extensions: 1391
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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