Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120177.Seq
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023838-2|CAA19505.1|  452|Caenorhabditis elegans Hypothetical ...    30   2.2  
U23452-5|AAK31546.1|  304|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U70851-5|AAB09127.1|  305|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AL110478-3|CAB54348.1|  380|Caenorhabditis elegans Hypothetical ...    28   6.6  
U40800-12|AAA81496.1|   88|Caenorhabditis elegans Hypothetical p...    28   8.7  

>AL023838-2|CAA19505.1|  452|Caenorhabditis elegans Hypothetical
           protein Y43C5A.2 protein.
          Length = 452

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 114 YVSADTDADEPIIYFENITECLTDDQCDKFTYF 16
           Y S  TD       F+N T  L  D CD+F YF
Sbjct: 327 YSSTYTDLGAKFSTFDNFTGPLGKDDCDEFQYF 359


>U23452-5|AAK31546.1|  304|Caenorhabditis elegans Hypothetical
           protein R07G3.6 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1

Query: 140 VRRRPQRRCTLAPTRTPTSLLF 75
           +RR+PQ   TL PT TPT  LF
Sbjct: 159 LRRKPQSIPTLPPTTTPTPRLF 180


>U70851-5|AAB09127.1|  305|Caenorhabditis elegans Hypothetical
           protein M02B7.1 protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 536 YGVYARQKQSRFCHAAVENDEGAILQRIFHTTVRHVPRSLY 658
           Y +   Q  S    + +E DE  IL+   H  +RHVPR L+
Sbjct: 137 YSIIIPQSLSMEMLSRIEQDE--ILKTAKHLDIRHVPRELF 175


>AL110478-3|CAB54348.1|  380|Caenorhabditis elegans Hypothetical
           protein Y26D4A.8 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +3

Query: 318 VFDEIQRHSKIRGAAVDRMGH*RIPRHGLA----TVSHRIYGQN 437
           +F E+Q+HS+I  A V+++   R   H LA    T  H  YG +
Sbjct: 285 LFKELQKHSRILYATVNKIPVVRKTNHALACVRKTTEHLAYGSS 328


>U40800-12|AAA81496.1|   88|Caenorhabditis elegans Hypothetical
           protein D2096.9 protein.
          Length = 88

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 155 IVLLVAMIPLTPLFSRYKDSYLLYSFRLIDLLRVLNRRT 271
           +VL++ ++   PLF   K   LLYSF+  D   ++N+R+
Sbjct: 11  LVLILGIVSSQPLFGLEKQ--LLYSFQDPDEFEIINKRS 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,524,333
Number of Sequences: 27780
Number of extensions: 400856
Number of successful extensions: 1127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)