Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120177.Seq
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41280.1 68418.m05017 hypothetical protein contains Pfam prof...    31   1.1  
At3g59240.1 68416.m06604 F-box family protein contains F-box dom...    29   4.6  
At1g07900.1 68414.m00859 LOB domain protein 1 / lateral organ bo...    28   6.1  
At3g44310.1 68416.m04758 nitrilase 1 (NIT1) identical to SP|P329...    28   8.1  
At2g21370.2 68415.m02542 xylulose kinase, putative similar to xy...    28   8.1  
At2g21370.1 68415.m02543 xylulose kinase, putative similar to xy...    28   8.1  

>At5g41280.1 68418.m05017 hypothetical protein contains Pfam
           profile: PF01657 domain of unknown function
          Length = 286

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +1

Query: 304 LYHFACLMKYKD---IQKYEVQQLIEWAINASPDMDLQQFRIEFMDKTTELNLRSCQPKS 474
           +Y+F+C+++Y D   +   E +    W+ +        +F     DK  E+ +RS    S
Sbjct: 117 IYYFSCMVRYSDKFFLSTLETKPNTYWSSDDPIPKSYDKFGQRLSDKMGEVIIRSSLLSS 176

Query: 475 FTYTFTTIWDTSTF 516
            ++T   + DT+TF
Sbjct: 177 -SFTPYYLMDTTTF 189


>At3g59240.1 68416.m06604 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 504

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 247 FASSKSAHLTKLLSSQATYLYHFACLMKYKD 339
           F  +K A LT LLS +  YL+ FA ++ + D
Sbjct: 24  FVPTKEAALTSLLSEKWRYLFAFAPILDFDD 54


>At1g07900.1 68414.m00859 LOB domain protein 1 / lateral organ
           boundaries domain protein 1 (LBD1) identical to
           SP|Q9LQR0 LOB domain protein 1 {Arabidopsis thaliana}
          Length = 190

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = -1

Query: 236 DETNTTNSCLCNEKKAASAVSWRLAKRSCCIC--VRRRPQRRCTLAPTRTPT 87
           D +  T   + +      ++S R+    C  C  +RRR   RC LAP   PT
Sbjct: 6   DASVATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPT 57


>At3g44310.1 68416.m04758 nitrilase 1 (NIT1) identical to SP|P32961
           Nitrilase 1 (EC 3.5.5.1) {Arabidopsis thaliana}
          Length = 346

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 584 VENDEGAILQRIFHTTVRHVPRSLYER-QKVSSFYHIELIEIALDKEKY 727
           V N+EG    R +H +  HVP     R   V+   H+ L+  A++KE Y
Sbjct: 83  VHNEEGRDEFRKYHASAIHVPGPEVARLADVARKNHVYLVMGAIEKEGY 131


>At2g21370.2 68415.m02542 xylulose kinase, putative similar to
           xylulose kinase (Xylulokinase) [Bacillus subtilis]
           Swiss-Prot:P39211
          Length = 385

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 533 RYGVYARQKQSRFCHAAVENDEGAILQRIF 622
           RYGVY+ +   ++      N  GAIL+++F
Sbjct: 223 RYGVYSHRLDDKWLVGGASNTGGAILRQLF 252


>At2g21370.1 68415.m02543 xylulose kinase, putative similar to
           xylulose kinase (Xylulokinase) [Bacillus subtilis]
           Swiss-Prot:P39211
          Length = 478

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 533 RYGVYARQKQSRFCHAAVENDEGAILQRIF 622
           RYGVY+ +   ++      N  GAIL+++F
Sbjct: 316 RYGVYSHRLDDKWLVGGASNTGGAILRQLF 345


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,949,551
Number of Sequences: 28952
Number of extensions: 349077
Number of successful extensions: 1000
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)