Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120176X.Seq
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 28 1.0
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 4.1
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 26 4.1
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy... 25 5.4
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 25 5.4
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.2
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 7.2
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 9.5
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.5
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 25 9.5
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 27.9 bits (59), Expect = 1.0
Identities = 16/69 (23%), Positives = 31/69 (44%)
Frame = +3
Query: 264 AFIHNRFHPLVTNFTNKMEFVGTETNDTSIPGEPILFTENEGVLLCSVDRPAIVKMLSRE 443
AF H F ++ + N +E N + P+L T+ L +D P ++++ +
Sbjct: 1380 AFDHQSFKDIIVHVAN-LELYYRALN-FYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKS 1437
Query: 444 FYTEALVNF 470
T ++NF
Sbjct: 1438 ENTPLILNF 1446
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 396 LCSVDRPAIVKMLSREFYTEAL-VNFENDNCNVRI 497
LC + AI L++EF EAL V ++ CN +
Sbjct: 850 LCYPETGAIESYLNQEFVQEALGVEYDYKGCNTEV 884
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 25.8 bits (54), Expect = 4.1
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = -2
Query: 188 ISRVLSIAMYLLSANLIFRVS*LSKLLRFFKSNSANS*VFWIFSSLFTISVTVRTLLHLT 9
+ R+LSIA +LLS + + R+ + + N+ S V + T SV V+ L +
Sbjct: 14 LKRILSIAFFLLSLSTLLRIVNAQQ----YVDNNIGSMVLSDYDFAETPSVRVQRALEIL 69
Query: 8 RF 3
R+
Sbjct: 70 RY 71
>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 410
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 319 SILLVKLVTSGWNLLCIKANV 257
S +L L+ GW ++C ANV
Sbjct: 19 SCILAWLIEEGWEVICYMANV 39
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 356 GNACVISFSAHKLHFVSKISNK 291
G+AC +S K+H ++ ISN+
Sbjct: 230 GSACAVSDDEGKIHVINDISNE 251
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 7.2
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = -3
Query: 478 SFSKFTKASV*NSRLSILTIAGLSTEHNSTPSFSVNKMGSPGMLVSLVSVPTN--SILLV 305
S S +++SV + I + GLS ++ + + + +G+P +S VSV N ++
Sbjct: 177 SSSSSSQSSVVSVNSEIFSYFGLSQQYVNYSTSRLCVVGTPRANMSTVSVTNNGSAVSNY 236
Query: 304 KLVTSGW---NLLCI 269
+ T+GW N C+
Sbjct: 237 TVNTNGWTSSNFKCV 251
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.0 bits (52), Expect = 7.2
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +1
Query: 19 NKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQP 198
N V+ +TE D +Q E +EFD + E ++I +L KY A L M
Sbjct: 1637 NFVQKITENAEFDLALQLLAEASEFDDLAIRHNEDLINIEINKSL-KYSAACLNLPMVDA 1695
Query: 199 LLEIF 213
++ F
Sbjct: 1696 HVKAF 1700
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +1
Query: 100 KNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAV 249
+N L E ++ +L SKY LST +T ++ K + +++ ++
Sbjct: 669 RNQDLLSEMEAIRKELENSKYQQQLSTDRLTNANNDVEAFKKEAKELRSI 718
>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 340
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 343 SLVSVPTNSILLVKLVTSGWNLL 275
+L+SVPT+SI+ + + WN L
Sbjct: 185 TLLSVPTSSIVSISADPTSWNNL 207
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 40 EIVNSDEKIQKTYELAEFDLKNLSSLESY 126
E + E IQK YE+ E + + S E++
Sbjct: 730 EASSQQENIQKAYEIIEKEFPTIGSAENH 758
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,233,577
Number of Sequences: 5004
Number of extensions: 43900
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -