Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120176X.Seq
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0757 + 24267599-24268882                                         29   2.4  
10_07_0161 - 13674631-13675433,13675793-13675862                       28   5.5  
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653...    28   5.5  
09_02_0336 - 7397745-7398308,7398813-7400723                           27   7.2  
05_05_0218 - 23367998-23368441                                         27   9.6  
04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178           27   9.6  
01_01_1009 + 7992040-7992287,7992747-7993144,7993301-7993441,799...    27   9.6  

>06_03_0757 + 24267599-24268882
          Length = 427

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 143 NWRSANTWLCSAPWK*PSRCWK 208
           +WR A  W+C  PW    + W+
Sbjct: 348 SWRPAGPWVCFNPWPAQQQAWR 369


>10_07_0161 - 13674631-13675433,13675793-13675862
          Length = 290

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 143 NWRSANTWLCSAPWK*PSRCWK 208
           +WR A  W+C  PW      W+
Sbjct: 229 SWRPAGPWVCFNPWPAQQLAWR 250


>03_02_0870 +
           11964135-11964224,11965013-11965175,11965262-11965380,
           11965971-11966083,11966179-11966234,11966320-11966417,
           11966588-11966725,11966820-11967125,11967208-11967471,
           11967587-11967754,11967838-11968056,11968115-11968158,
           11968761-11968830,11968949-11969110,11969672-11969779,
           11969873-11969910,11970121-11970265,11970800-11970926,
           11971037-11971230,11971529-11971659,11972014-11972089,
           11972218-11972328,11972465-11972647,11973264-11973407,
           11973946-11973969,11974555-11974728,11974808-11975155,
           11975232-11975561,11975776-11975961,11976052-11977026,
           11977145-11977399
          Length = 1852

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +1

Query: 37  TEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLE 207
           TE+  S+++  K  E+ E D+ + S  + YET ++  + SK    LS L   +P  +
Sbjct: 84  TELQLSNDRQSKPDEVTEDDMPSTSGRQLYET-EVPASSSKKHCSLSPLPAYEPAFD 139


>09_02_0336 - 7397745-7398308,7398813-7400723
          Length = 824

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +1

Query: 1   MKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLST 180
           MK +K N V  + EI    +   K +  + FD+K+L        ++I    +KY   LS 
Sbjct: 617 MKSMKLNDVWDLEEIPKGAKTETKKFLSSNFDMKDLGEASYVLGIEIHRDRTKYALGLSQ 676

Query: 181 LEMTQPLLEIF 213
               + +L+ F
Sbjct: 677 KTYIEKVLKKF 687


>05_05_0218 - 23367998-23368441
          Length = 147

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = -2

Query: 389 PLVFCKQNGFSGNACVISFSAHKLHFVSKISNKWMESI 276
           P+   ++ G  G+ C   + + +LH V  +  +W+E++
Sbjct: 68  PVAPPQRGGAEGDGCTAPWRSCRLHVVEAVFLRWLEAV 105


>04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178
          Length = 455

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = +1

Query: 85  AEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAVVLAH 261
           +EFD+K+L + +    ++I   ++  +  LS     + +LE F N  D + I+  + AH
Sbjct: 238 SEFDMKDLGAAKKILGMEITRDINFGLLFLSQQSYIKKVLEHF-NMHDAKPISTPIAAH 295


>01_01_1009 +
           7992040-7992287,7992747-7993144,7993301-7993441,
           7993517-7993773,7993868-7994169,7994342-7994580,
           7994654-7994857,7994946-7995680,7995764-7996155
          Length = 971

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 231 SANCRRGVSTLAFIHNRFHPLVTN-FTNKMEFV 326
           S+ C R  ST AF+H +   ++T+   NK+ +V
Sbjct: 624 SSGCERNWSTFAFVHTKVRNILTHKKLNKLVYV 656


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,282,725
Number of Sequences: 37544
Number of extensions: 282053
Number of successful extensions: 695
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)