Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120176X.Seq
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_41864| Best HMM Match : Tropomyosin (HMM E-Value=0.17)              28   5.6  
SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_15542| Best HMM Match : Lig_chan (HMM E-Value=0)                    27   7.4  
SB_48276| Best HMM Match : RVT_1 (HMM E-Value=0.57)                    27   9.8  
SB_32879| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_51289| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.8  

>SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 4   KRVKCNKVR-TVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYM 165
           KR    K++ T  E+V   +K +K + L + +LK L   E Y+ LK K  L KY+
Sbjct: 73  KRESKKKIKETERELV---QKGKKPFYLRKSELKKLELAEKYKELKSKGKLQKYL 124


>SB_41864| Best HMM Match : Tropomyosin (HMM E-Value=0.17)
          Length = 227

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +1

Query: 19  NKVRTVTEIVNS-DEKIQKTYELAEFDLKNLSSLESY-ETLKIKLALSKYMAMLSTLEMT 192
           N V+ + E+    +EK  K Y+L    L+ L+ ++ Y ETL+    + K +    T +  
Sbjct: 104 NIVKDIAEVNKKIEEKKAKLYDLERRHLRALNKIDHYEETLRASEQIGKRVVTNYTPKSD 163

Query: 193 QPLLEIFRNKADTRQIAA 246
           Q   EI  +  D  + AA
Sbjct: 164 QEYQEIISDLRDGIKHAA 181


>SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 94  DLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFR 216
           + KN+SS   Y T K K +L++ +   + + +  PL+E+FR
Sbjct: 275 ETKNMSSF--YWTKKYKKSLARSLREAAVIHLGVPLVELFR 313


>SB_15542| Best HMM Match : Lig_chan (HMM E-Value=0)
          Length = 729

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 216 KQSRHSANCRRGVSTLAFIHNRFHPLVTNFTNKMEFVGT 332
           KQ + S  C +G S  +F     +PL      +MEFV +
Sbjct: 400 KQKKISYGCLKGGSMASFFEKSNNPLYKTMFRQMEFVSS 438


>SB_48276| Best HMM Match : RVT_1 (HMM E-Value=0.57)
          Length = 427

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 264 AFIHNRFHPLVTNFTNKMEFVGTETNDTSIPGEPILFTENEGVLL 398
           A  HN  H +   F +  EF G   N   +PG P L     GVL+
Sbjct: 163 ATYHNTKHTIRVVFDSSCEFQGISLNKVLLPG-PDLMNNLIGVLM 206


>SB_32879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -3

Query: 382 FSVNKMGSPGMLVSLVSVPTNSILLVKLVTSGWNLLCIK 266
           F+ ++ G+P   V ++++PTNS+ +  +VT G  L   K
Sbjct: 45  FNEHRDGTPSSPVYVMTMPTNSVRVRFIVTLGNKLFSAK 83


>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 19/45 (42%), Positives = 22/45 (48%)
 Frame = +1

Query: 10  VKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIK 144
           VKC + RT  EI NSD K  K    + F + NL  L     LK K
Sbjct: 57  VKCPQCRTEMEIPNSDVKRLK----SNFYINNLLDLMDETRLKAK 97


>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 264  AFIHNRFHPLVTNFTNKMEFVGTETNDTSIPGEPILFTENEGVLL 398
            A  HN  H +   F +  EF G   N   +PG P L     GVL+
Sbjct: 947  ATYHNTKHTIRVVFDSSCEFQGISLNKVLLPG-PDLMNNLIGVLM 990


>SB_51289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = +3

Query: 291 LVTNFTNKMEFVGTETNDTSIPGEPILFTENEGVLLCSVDRPAIVKMLSREFYTEA 458
           LVT+    +EF+G +T D    G+P L  + E   L + + P + +ML RE   EA
Sbjct: 318 LVTDGLEALEFIGKKTMDVISDGDPGLRKKREA--LSAGNGPNLSQML-REAKEEA 370


>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1572

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 330 TETNDTSIPGEPILFTENEGVLLCSVDRPAIVKMLS 437
           +E  D SI   P +   N G L+C VDR +I ++ S
Sbjct: 37  SELADVSIEPTPHILVGNGG-LMCGVDRESITRVFS 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,656,668
Number of Sequences: 59808
Number of extensions: 325789
Number of successful extensions: 774
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)