Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120176X.Seq
         (540 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-1|CAJ14152.1|  324|Anopheles gambiae putative dodecenoy...    29   0.100
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    25   1.2  
AF063021-4|AAC16248.1|   93|Anopheles gambiae unknown protein.         24   2.8  
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    23   5.0  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    23   8.7  

>CR954257-1|CAJ14152.1|  324|Anopheles gambiae putative
           dodecenoylCoA deltaisomerase protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 0.100
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = +3

Query: 306 TNKMEFVGTETN-DTSIPGEPILFTENEGVLLCSVDRPAI---VKMLSREFYTEALVNFE 473
           T   E  GT+     S P EPI+  +   + L  ++RP +   +  ++    + A+  FE
Sbjct: 26  TTTTESTGTDQQMANSHPEEPIVVEKENNITLIGINRPKVRNAIDSITGRKLSAAIAEFE 85

Query: 474 ND 479
           ND
Sbjct: 86  ND 87


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 129 NSEN*IGAQQIHGYAQHPGNDPAAVGNI*KQSRHSANCRR 248
           NS N   + Q H   QH  + P+AV N    +RH++  RR
Sbjct: 820 NSTNSAYSMQSHQQQQH--HQPSAVSNSNGLARHNSKSRR 857


>AF063021-4|AAC16248.1|   93|Anopheles gambiae unknown protein.
          Length = 93

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 391 CCCAPSTDRL 420
           CCC PS++RL
Sbjct: 67  CCCVPSSERL 76


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
            channel alpha1 subunit protein.
          Length = 1893

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 115  NCLDFLNQIRPIRRFFGSFHRCLQFR 38
            NC++F  + +PIRR+    HR +Q++
Sbjct: 1144 NCIEFALKAKPIRRYIPK-HR-IQYK 1167


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 245 AAICRVSALFLNISNSGWVISRVLSIAMYLLS 150
           A + R+  LF ++ N+G  +   L +AM L S
Sbjct: 116 AHLFRMDELFSSLMNAGQELDSSLKVAMVLKS 147


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 568,440
Number of Sequences: 2352
Number of extensions: 11390
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 50320221
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)