Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120176X.Seq
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      29   2.8  
U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    28   3.7  
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U41995-11|AAA83467.1|  665|Caenorhabditis elegans Hypothetical p...    28   4.9  
AF067607-6|AAY86221.1|  461|Caenorhabditis elegans Hypothetical ...    28   4.9  
AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical ...    28   4.9  
AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical ...    28   4.9  
AC024790-14|ABA61861.1|  417|Caenorhabditis elegans Hypothetical...    28   4.9  
Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z81493-10|CAB04044.2|  508|Caenorhabditis elegans Hypothetical p...    27   8.6  

>Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical
           protein W09D12.1 protein.
          Length = 472

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = -3

Query: 439 RLSILTIAGLSTEHNSTPSFSVNKMGSPGMLVSLVSV 329
           RL+I  I GLS+  +STPS  V++   P  L S+V++
Sbjct: 260 RLAIRKIYGLSSVDHSTPSSDVDRSKCPKHLDSVVAI 296


>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
           protein K06C4.15 protein.
          Length = 1067

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 421 IAGLSTEHNSTPSFSVNKMGSPGML 347
           I+ L T H STPS    ++ SPGM+
Sbjct: 142 ISDLRTPHGSTPSTGTPRLSSPGMV 166


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical protein
            R03E1.1 protein.
          Length = 1043

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 330  TETNDTSIPGEPILFTENEGVLLCSVDRPAIVK 428
            T   + SIPG  I+  +  GV+   ++RP +VK
Sbjct: 993  TSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 330  TETNDTSIPGEPILFTENEGVLLCSVDRPAIVK 428
            T   + SIPG  I+  +  GV+   ++RP +VK
Sbjct: 993  TSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025


>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 355 PENPFCLQKTRGCCCAPSTD 414
           PEN FC + T G CC P  D
Sbjct: 166 PENGFC-ETTTGFCCVPGVD 184


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 421 IAGLSTEHNSTPSFSVNKMGSPGML 347
           I+ L T H STPS    ++ SPGM+
Sbjct: 222 ISDLRTLHGSTPSTGTPRLSSPGMV 246


>Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 10  VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 129
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196


>Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical
           protein F02E9.9a protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 10  VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 129
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 120 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 158


>Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 10  VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 129
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196


>U41995-11|AAA83467.1|  665|Caenorhabditis elegans Hypothetical
           protein E02C12.10 protein.
          Length = 665

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 369 LFTENEGVLLCSVDRPAIVKMLSREFYTEALVNFENDNCNVRIAKTFAPLSA 524
           L+  ++G+L   V R  + + L + F TEA      +  N+   K + P++A
Sbjct: 420 LYEFSDGILKTHVTRENVEETLQKTFNTEAKFGDNQNAINISNMKGYMPINA 471


>AF067607-6|AAY86221.1|  461|Caenorhabditis elegans Hypothetical
           protein C18H7.11 protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 402 SVDRPAIVKMLSREFYTEALVNFENDNCNVRIAKTFAPLSAKTRR 536
           SV+   ++     + Y E +VNF+ DN    I+ T+     KT R
Sbjct: 255 SVNTTGLIVSGENKPYDEHVVNFQTDNSREGISGTYVSFFLKTNR 299


>AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical
           protein K06A5.8a protein.
          Length = 874

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 115 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 14
           N LDF+  ++P+  F FG+F   +     FEL C+
Sbjct: 80  NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114


>AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical
           protein K06A5.8b protein.
          Length = 942

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 115 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 14
           N LDF+  ++P+  F FG+F   +     FEL C+
Sbjct: 80  NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114


>AC024790-14|ABA61861.1|  417|Caenorhabditis elegans Hypothetical
           protein Y47D7A.16 protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
 Frame = -2

Query: 344 VISFSAHKLHFVSKISNKWMESIVYKS*CAN-TTAAICRVSALFLNISNSGWVISRVLSI 168
           VIS  A  L F  KI +  +  + + + C++ TTA I  ++AL  N   +      ++SI
Sbjct: 304 VISPLASYLQFFVKIRS--LPILAFLTLCSSLTTAVIIYLAALSPNWIFNSETAGTIISI 361

Query: 167 AMYLLSANL--IFRVS*LSKLLRFFKSNSANS*VFW 66
           A  L++A L    RV   + LLR  + N   S +FW
Sbjct: 362 ASSLIAAGLHSYLRVM-FAALLR--EGNQKESRLFW 394


>Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical
           protein H25K10.6 protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 43  IVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLS 177
           I++S   ++   E+A  D +NLS L   ET+  K +    M ML+
Sbjct: 247 ILSSIRNVRGDVEIAATDFENLSFLTGLETITSKHSYLSKMTMLN 291


>Z81493-10|CAB04044.2|  508|Caenorhabditis elegans Hypothetical
           protein F01D5.9 protein.
          Length = 508

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -2

Query: 176 LSIAMYLLSANLIFRVS*LSKLLRFFK 96
           + IA+YLL+  +I+ V  LSK+L+F K
Sbjct: 1   MGIAVYLLALVVIYVVFNLSKILKFVK 27


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,455,335
Number of Sequences: 27780
Number of extensions: 252708
Number of successful extensions: 666
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)