Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120176X.Seq
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08030.1 68414.m00876 expressed protein                             34   0.070
At1g77630.1 68414.m09038 peptidoglycan-binding LysM domain-conta...    28   4.6  
At4g31370.1 68417.m04448 fasciclin-like arabinogalactan family p...    27   8.0  
At1g77580.2 68414.m09032 myosin heavy chain-related low similari...    27   8.0  
At1g77580.1 68414.m09033 myosin heavy chain-related low similari...    27   8.0  

>At1g08030.1 68414.m00876 expressed protein
          Length = 147

 Score = 33.9 bits (74), Expect = 0.070
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = -3

Query: 439 RLSILTIAGLSTEHNSTPSFSVNKMGSPGMLVSLVSVPTNSILLVKLVTSGW 284
           RL  +   GL+ EH  + S   N +GS   ++S V VP+N+   +K + SGW
Sbjct: 82  RLDSMLYVGLTEEHRESASLFANVVGS--QVLSQV-VPSNATAKIKALKSGW 130


>At1g77630.1 68414.m09038 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain
          Length = 423

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 246 RGVSTLAFIHNRFHPLVTNFTNKMEFVGTETNDTSIPGEPIL 371
           RG+ T+A I  RF   VT+ TN       + N   I   P+L
Sbjct: 178 RGIDTMAGIAKRFSTSVTDLTNVNAMGAPDINPGDILAVPLL 219


>At4g31370.1 68417.m04448 fasciclin-like arabinogalactan family
           protein similar to fasciclin-like
           arabinogalactan-protein 1 [Arabidopsis thaliana]
           gi|13377776|gb|AAK20857
          Length = 278

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = +1

Query: 19  NKVRTVTEIVNSDEKIQKTYELAEFDLKNLSS----LESYETLKIKLALSKYMAMLSTLE 186
           +K +T+T +  S++ I      +E +L+N+      L+ Y+ LK++  + +   ML+TL 
Sbjct: 54  DKYQTITVLAVSNDAISSITNRSEVELRNILMTHVILDYYDELKLQ-GMREKSIMLTTLY 112

Query: 187 MTQPLLE 207
            T  L E
Sbjct: 113 QTTGLGE 119


>At1g77580.2 68414.m09032 myosin heavy chain-related low similarity
           to SP|P08799 Myosin II heavy chain, non muscle
           {Dictyostelium discoideum}
          Length = 779

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +1

Query: 10  VKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLES-YETLKIKLALSKYMAMLSTLE 186
           VKCN+   V  I NS+    +T EL E     L  LE+  E LK ++  ++  A++    
Sbjct: 373 VKCNREEAVVHIENSEVLTSRTKELEE----KLEKLEAEKEELKSEVKCNREKAVVHVEN 428

Query: 187 MTQPLLEIFRNK 222
                +E+  ++
Sbjct: 429 SLAAEIEVLTSR 440


>At1g77580.1 68414.m09033 myosin heavy chain-related low similarity
           to SP|P08799 Myosin II heavy chain, non muscle
           {Dictyostelium discoideum}
          Length = 629

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +1

Query: 10  VKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLES-YETLKIKLALSKYMAMLSTLE 186
           VKCN+   V  I NS+    +T EL E     L  LE+  E LK ++  ++  A++    
Sbjct: 339 VKCNREEAVVHIENSEVLTSRTKELEE----KLEKLEAEKEELKSEVKCNREKAVVHVEN 394

Query: 187 MTQPLLEIFRNK 222
                +E+  ++
Sbjct: 395 SLAAEIEVLTSR 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,607,712
Number of Sequences: 28952
Number of extensions: 227468
Number of successful extensions: 522
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)