Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120175.Seq
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    28   1.7  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.2  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   2.2  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    27   3.9  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    27   3.9  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    27   3.9  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   5.2  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    26   5.2  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   6.8  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    26   6.8  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    25   9.0  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    25   9.0  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    25   9.0  

>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -3

Query: 497 MLKNWPKLLLARFMVPKSENQNPQGLPCTLGPMVYVVLPLAGSN 366
           +LK  P  LLA+ ++ K E++N    P  + P +Y+++ +A S+
Sbjct: 549 LLKMVPMELLAKILLEKLESKN----PILIEPSIYILVHIAASD 588


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 529  YLATFCKDTCKAIFPLKMEPNVCIHLPDKNKTSE--RDMLIRRFYIINRDNN 678
            +L   CK  C  IFP+   P   I+  +    +   ++ L+ + +  N+D N
Sbjct: 1328 FLCPLCKALCNTIFPILWRPKEEINFQEAGVLTAPLKNWLVSKTFSFNKDLN 1379


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 413 TLGPMVYVVLPLAGSNTTIFLSGSGY 336
           T+   V VVLP AG+NT   +SGS +
Sbjct: 290 TVSGTVEVVLPTAGTNTMTVVSGSRF 315



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 413 TLGPMVYVVLPLAGSNTTIFLSGSGY 336
           T+   V VVLP AG+NT   +SGS +
Sbjct: 430 TVSGTVEVVLPTAGTNTMTVVSGSRF 455


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 368 NTTIFLSGSGYNLSSHSCKLFKLASRQNSF 279
           NT ++ +G G ++ +H  +LFK   R   F
Sbjct: 290 NTHLYANGEGQHIKNHLLELFKKLHRTQDF 319


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 398 VYVVLPLAGSNTTIFLSGSGYNLSS 324
           V VV+P AG  TT   SGS Y +S+
Sbjct: 173 VEVVIPTAGYITTTLTSGSSYPVST 197


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 398 VYVVLPLAGSNTTIFLSGSGYNLSS 324
           V VV+P AG+ TT   SGS Y +++
Sbjct: 130 VEVVIPTAGTFTTTLTSGSSYPVAT 154


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 420 QALRILVFRLWNHKTCQKQLWP 485
           Q L IL+ +LWNHK  +  + P
Sbjct: 219 QRLAILIRKLWNHKAFKSHVSP 240



 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 537 NILQRHLQSDFSFENGTKR 593
           NIL+RH++ D + +NG ++
Sbjct: 9   NILKRHIEEDNNIDNGKRK 27


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 272 NLPSKQYNSVLKSCLVSH 219
           +LPSK+ N +L+SC+  H
Sbjct: 99  DLPSKKQNRLLQSCITKH 116


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 275 KNLPSKQYNSVLKSCLVSH*SPFAPA 198
           +N+P  Q +S++K+   ++ +PF PA
Sbjct: 298 QNVPPAQIDSIMKAAFPNYNAPFQPA 323


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 471 KQLWPVF*HSIRSIHKHNNIFGNILQRHL 557
           KQL   F + + ++HK    F  +L+RHL
Sbjct: 198 KQLDHFFSYKVTTVHKSYQRFATLLRRHL 226


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 83  YNNNNGAAFNVKHDETG--VMCYFTPSSVQLE 172
           ++NN+    N+KH E G  +  Y TP   +LE
Sbjct: 61  FHNNHSVILNIKHPELGEPLKPYQTPLPPELE 92


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 211 HLLLPQHLCQLAWLQLNGRRR 149
           H+++PQ   Q +W+  +GR R
Sbjct: 330 HVVIPQDAQQSSWISFDGRNR 350


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = -3

Query: 440 NQNPQGLPCTLGPMVYVVLPLAGSNTTIFL--SGSGYNLSSHSCKLFKLASRQNS--FFK 273
           N +  G P +L  +     PLA S T+  L  S S  NL      LF+  + +N+  +F 
Sbjct: 203 NNSSSGFPSSLNGIPIASPPLATSPTSFSLASSASSTNLGGSKGLLFQQMTSENNRDYFS 262

Query: 272 NLPS 261
             P+
Sbjct: 263 RRPT 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,343,539
Number of Sequences: 5004
Number of extensions: 74504
Number of successful extensions: 249
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)