Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120175.Seq
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368...    31   1.0  
11_06_0364 - 22727978-22729149,22730475-22730727,22731628-227319...    29   5.4  
10_05_0034 + 8431753-8431790,8431940-8432063,8432726-8433038,843...    28   9.4  
06_01_0293 - 2139421-2139600,2139716-2140471,2140830-2140935,214...    28   9.4  
03_03_0129 - 14684003-14684123,14684205-14684323,14684406-146845...    28   9.4  

>06_01_0510 +
           3681369-3681645,3682825-3682886,3683016-3683165,
           3683776-3683952,3684496-3684711,3684802-3686480,
           3686602-3686667,3686753-3686822,3686909-3687547
          Length = 1111

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 12/110 (10%)
 Frame = +1

Query: 265 GRFLKNEFCRLANLNSLHEWEDKLYPEPD--KNIVVLEPANG---KTTYTIGPRVQGKP- 426
           GR L        + + L  W   LY   D    + +LE A G   K  ++IGP +Q KP 
Sbjct: 342 GRILSRSHSIALSSSCLSTWHHLLYKLGDLINQLPILEAAFGPVLKIVFSIGPDIQNKPL 401

Query: 427 ---CGFWFSDFGTIK-RAKSNFGQFFSI--QYGAFTNTTIYLATFCKDTC 558
              C   F ++ + K R  ++ G++  I       + + I+L T     C
Sbjct: 402 YSFCVNLFHEYISTKVRDMASHGEYLPIPLNQNLLSQSCIHLKTLMDGQC 451


>11_06_0364 -
           22727978-22729149,22730475-22730727,22731628-22731963,
           22732306-22732512,22734988-22735686,22736441-22736590,
           22740204-22740962,22741023-22741235
          Length = 1262

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 332 LSSHSCKLFKLASRQNSFFKNLPSKQYNSVLKSCLV 225
           L+S SCKL    S + S   + P  Q+  V+K C+V
Sbjct: 862 LASLSCKLADAGSNKKSNTTHSPFPQFAEVIKQCVV 897


>10_05_0034 +
           8431753-8431790,8431940-8432063,8432726-8433038,
           8433189-8433251,8433778-8434058
          Length = 272

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 630 TRHVDSSVLHNQPRQQRINLRHRKNQKRSS*YAENE 737
           T HV SS++H    +Q  N+R+ +N+K    YA +E
Sbjct: 23  TAHVTSSIVH----EQSSNIRYGENRKHGQRYAYHE 54


>06_01_0293 -
           2139421-2139600,2139716-2140471,2140830-2140935,
           2140999-2141249,2141342-2141443,2141557-2141876,
           2142350-2142546,2143668-2143786,2143876-2143997,
           2144877-2145081
          Length = 785

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 579 FQRKNRFASVFAKCCQIYCCVCECSVLNAKKLAKVAFGTFYGSKVGKPKS 430
           F+RKN+ +    K C+     C   V++  KL+ V   T     +G P+S
Sbjct: 147 FRRKNKGSKTATKICECIPSFCTAYVVSKGKLSSVHSAT--SDAIGTPES 194


>03_03_0129 -
           14684003-14684123,14684205-14684323,14684406-14684501,
           14684605-14684712,14684974-14685060,14685135-14685338,
           14685429-14685488,14686096-14686264,14686400-14686473,
           14686586-14686897,14687054-14687212
          Length = 502

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -2

Query: 510 CSVLNAKKLAKVAFGTFYGSKVGKPKSAGLALHSWTDGVRSLAVGRLQH 364
           CS +   ++A    G    +K+G+P +A LA  +      SLAV    H
Sbjct: 45  CSNIGVAQIATAEVGAIPNAKLGQPSAAALAEQALLGSDASLAVHAGNH 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,287,371
Number of Sequences: 37544
Number of extensions: 462982
Number of successful extensions: 1402
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)