Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120175.Seq
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12)                 31   1.4  
SB_17977| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)                       28   7.2  
SB_19562| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)                 28   9.5  
SB_48346| Best HMM Match : PDZ (HMM E-Value=1.5e-33)                   28   9.5  
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)                       28   9.5  

>SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12)
          Length = 469

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 310 SLHEWEDKLYPEPDKNIVVLEPANGKTTYTIGPRVQGKPCGFWF 441
           S   +ED+LY +   N + L+PA+ + +  I  R Q + C  WF
Sbjct: 10  SYQAYEDELYGQTSPNSLSLQPAS-RLSAKILHRFQNRSCASWF 52


>SB_17977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 20  SDDNQPKRERVESGEDQQLVPYNNNNGAAFNVKHDETGV 136
           SDDN+   +R + G D      +N NG  +NVK+ + GV
Sbjct: 109 SDDNKGDIDRGDGGNDDSSGGNDNRNG-GYNVKNYDNGV 146


>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 613

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 436 WFSDFGTIKRAKSNFGQFFSIQYG-AFTNTTIYLATFCKDT 555
           WF   GT++      G FF +  G  FT+  I + TF KDT
Sbjct: 307 WFDKDGTLRAINPESG-FFGVCPGTTFTSNPIAMKTFQKDT 346


>SB_19562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 446 SENQNPQGLPCTLGPMVYVVLPLAG 372
           S + NPQ +P T  P + VV+P AG
Sbjct: 47  SVSPNPQAMPMTSRPQLKVVIPSAG 71


>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
 Frame = -3

Query: 464 RFMVPKSENQNPQGLPCTLGPMV--YVVLPLAGSNTTIFL--SGSGYNLSSHSCKLFKLA 297
           +F   K E + P  + C   P    YV  P   S  + F   +G+G     H+C  + + 
Sbjct: 632 KFDTKKLECEWPNKVNCKSRPTTVPYVTKPTPPSGNSEFCKKNGNGRYRDPHNCLGYIVC 691

Query: 296 SRQNSFFKNL-PSKQYNSVLKSC 231
              N +F+N     ++N V K C
Sbjct: 692 RGGNIYFRNCRRGLRFNGVTKRC 714


>SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
          Length = 1799

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = +1

Query: 547 KDTCKAIFPLKMEPNVCIHLPDKNKTSERDMLIRRFYIINRDNNGSIYATGKIRNVPLDM 726
           K + K  F L  EPN  I     N T E      R++I+    N   Y  GK+  + L  
Sbjct: 799 KLSSKKSFNLPKEPNTNIQERHLNPTPEDIANAERYWILQCQKNICRYRDGKVLRISLIK 858

Query: 727 Q 729
           Q
Sbjct: 859 Q 859


>SB_48346| Best HMM Match : PDZ (HMM E-Value=1.5e-33)
          Length = 708

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 371 SRPTARLRTPSVQECRASPADFGFPTLEP*NVPKAT 478
           S  T RLRTPS ++ +ASP +    T+E   V K+T
Sbjct: 162 SASTKRLRTPSKEDIKASPLNNN--TIEQVGVEKST 195


>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 549

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 436 WFSDFGTIKRAKSNFGQFFSIQYG-AFTNTTIYLATFCKDT 555
           WF   GT++      G FF +  G +F +  I ++TF KDT
Sbjct: 177 WFDKDGTLRAINPECG-FFGVAPGTSFLSNPIAMSTFQKDT 216


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,951,280
Number of Sequences: 59808
Number of extensions: 573191
Number of successful extensions: 1588
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1583
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)