Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120175.Seq
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z75545-5|CAA99883.3|  836|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF067936-3|AAC19216.2|  922|Caenorhabditis elegans Hypothetical ...    29   4.8  
Z95619-3|CAB54269.1|  490|Caenorhabditis elegans Hypothetical pr...    28   8.4  
U28944-18|AAA68375.2|  246|Caenorhabditis elegans Helix loop hel...    28   8.4  

>U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical
          protein T05E8.1 protein.
          Length = 893

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 2  KIGDSSSDDNQPKRERVESGEDQQ 73
          K GDSSSDD+ P+R+R E   D +
Sbjct: 15 KRGDSSSDDSGPERDRDEDDSDNE 38


>Z75545-5|CAA99883.3|  836|Caenorhabditis elegans Hypothetical
           protein K10D3.1 protein.
          Length = 836

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
 Frame = +2

Query: 122 DETGVMCYFTPSSVQLEPRELTKMLW---QEQ---MAINVKRGNFSILNCIV 259
           DE   +  F    VQ+ P E TK LW   QE    + I+++ G FS+ NC++
Sbjct: 30  DEVNPVLEFVDFRVQVIPYE-TKPLWRIKQESFKIVGISIENGLFSVCNCLI 80


>AF067936-3|AAC19216.2|  922|Caenorhabditis elegans Hypothetical
           protein C24G6.3 protein.
          Length = 922

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 306 QISQSTKFVFQKSAFETIQFSIEKLPRFTLIAICSCHNIFVNS 178
           ++S  T  VF++S FE+   + E  PR  + AI  C +++  S
Sbjct: 420 ELSIETLAVFEQSIFESCSRAREFKPREAITAIYECASVYFES 462


>Z95619-3|CAB54269.1|  490|Caenorhabditis elegans Hypothetical
           protein H21P03.3b protein.
          Length = 490

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 346 PDKNIVVLEPANGKTTYTIGPRVQGKPCGFWFSDFGTIKRAKSNFG 483
           PD+N+ V    N   T  IGP+++  P      D G  ++A+++ G
Sbjct: 25  PDQNVDVKVQENNVVTTKIGPKLETIPAAKMQDDNGDEEKAENSEG 70


>U28944-18|AAA68375.2|  246|Caenorhabditis elegans Helix loop helix
           protein 14 protein.
          Length = 246

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 332 LSSHSCKLFKLASRQNSFFKNL-PSKQYNSV 243
           L+SHSCK+F++ +   SF   L  S  YN V
Sbjct: 11  LNSHSCKIFQICTSSQSFDLELFNSSLYNLV 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,654,826
Number of Sequences: 27780
Number of extensions: 424562
Number of successful extensions: 1175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)