Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120175.Seq
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    24   1.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   9.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.5  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 460 LWFQSRKTKIRRACPAL 410
           +WFQ+R+TK ++  P L
Sbjct: 54  IWFQNRRTKWKKQNPGL 70


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 383 PLAGSNTTIFLSGSGYNLSSHSCKLFKLASRQNS 282
           P+ GS  +   SGS  NLSS S      ASR+N+
Sbjct: 594 PINGSGASG--SGSAENLSSGSNNQTSSASRENT 625


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 408 WTDGVRSLAVGRLQHHD 358
           WTDG+  +A+  +  HD
Sbjct: 371 WTDGIFGMALSPVDIHD 387


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 398 VYVVLPLAGSNTTIFLSGSGYNLSS 324
           +Y+VLP+      IF++G   N+S+
Sbjct: 50  LYIVLPITVIYAVIFVTGLVGNVST 74


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 308 IVCTNGKTSCIPSPIKISWC 367
           +V ++G  SC+PS   ++ C
Sbjct: 150 LVFSSGSVSCVPSVKHVAKC 169


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 357  YRGVGAGQRQDYVHHRSKSA 416
            Y G+G G   D ++ R+K +
Sbjct: 1440 YNGIGTGDPSDMLNTRTKGS 1459


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,740
Number of Sequences: 438
Number of extensions: 5522
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)