Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120175.Seq
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative ...    28   7.9  
At1g50180.1 68414.m05627 disease resistance protein (CC-NBS-LRR ...    28   7.9  

>At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative
           similar to DNA-binding protein DF1 [Pisum sativum]
           GI:13646986
          Length = 603

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 23  DDNQPKRERVESGEDQQLVPYNNNNGAAFN 112
           D+++ +    E G + +LVP NNNN    N
Sbjct: 572 DEDEEEENEEEEGGEFELVPSNNNNNKTTN 601


>At1g50180.1 68414.m05627 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 857

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 250 LYCFEGRFLKNEFCRLANLNSLHEW 324
           L  FEG F+ ++ C   NL +L EW
Sbjct: 760 LQLFEGSFVGSKLCCSKNLENLEEW 784


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,408,213
Number of Sequences: 28952
Number of extensions: 385374
Number of successful extensions: 1036
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)