Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120174.Seq
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242...    29   3.3  
10_02_0110 - 5371536-5372882                                           29   3.3  
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445...    29   3.3  
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906...    29   4.4  
07_03_1005 + 23249040-23249228,23250453-23250574,23250654-232508...    29   4.4  
12_02_0942 - 24653834-24654046,24654346-24654482,24654626-246549...    29   5.8  

>12_01_0318 -
           2425178-2425267,2425830-2426008,2426594-2426654,
           2426851-2427160,2428514-2428777,2432595-2433865
          Length = 724

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 533 FVCQRNDCGSTRR*NGSARLRKRAP 607
           FVC R  C   RR  G ARLR+ +P
Sbjct: 430 FVCSRLACALLRRRRGRARLRRASP 454


>10_02_0110 - 5371536-5372882
          Length = 448

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
 Frame = -2

Query: 327 ITPDLVMSTVCGCKY----SG-SPCFATLLEHGAGFGRHAQTSICTCRRRGHVLPVHNLH 163
           I+PD  +S +   +Y    +G S C+        G  R  Q S+CT R R H L VH   
Sbjct: 320 ISPDGKLSFIVTSRYFDGSAGVSSCYHLAFGSNGGCTRE-QVSVCTWRVRLHELRVHRSD 378

Query: 162 ILNC-WRC 142
            +N  W C
Sbjct: 379 AMNLRWFC 386


>02_01_0599 -
           4455151-4455915,4455999-4456098,4456176-4456222,
           4456566-4456612,4457299-4457461,4458013-4458042
          Length = 383

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +2

Query: 323 VIQLIMKSKLPYAIELQEWLL--EEVIPQV--LCTGKYAPAVEMDTNDVIAKIDDLTQKL 490
           V+ ++   +  + +EL+E     E ++ Q+      ++AP+VE    +V A I+ +T+K+
Sbjct: 268 VMAILKNRREKFTLELKELQRKRENLLAQMGDPSANRHAPSVEHSLAEVAAHIEAVTEKI 327

Query: 491 TVANADWRK 517
            +    W+K
Sbjct: 328 IMEEEKWKK 336


>11_03_0026 -
           9057965-9058234,9059410-9059522,9059612-9059802,
           9060606-9060720,9061781-9061907,9062915-9062990,
           9064247-9064365,9065430-9065593,9065666-9065779,
           9065966-9066065,9066276-9066340,9068175-9068253,
           9069513-9069659,9069904-9070161,9070657-9070852,
           9071179-9071402,9072531-9072554
          Length = 793

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 325 HARFGNEHCVWVQIQRVALLCHA 257
           H  FG++H + VQ+Q  A++CHA
Sbjct: 203 HIVFGSQHNLPVQLQAKAVICHA 225


>07_03_1005 +
           23249040-23249228,23250453-23250574,23250654-23250800,
           23250932-23250998,23251763-23251836,23252010-23252102,
           23253433-23253550,23254340-23254402,23254774-23254806,
           23255325-23255399
          Length = 326

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +2

Query: 194 RRRQVQIDV*ACRPNPAPCSNSVAKQGDPL--YLHPHTVLITKSGVIQLIMKSKLPYAIE 367
           RR  V++   A    PAP S +++   D    +L PHT+  T  G I L+ ++ +     
Sbjct: 58  RRDAVRVCSQAGAAGPAPLSKTLSDLKDSCWRFLRPHTIRGTALGSIALVARALIENPQL 117

Query: 368 LQEWLL 385
           +  WL+
Sbjct: 118 INWWLV 123


>12_02_0942 -
           24653834-24654046,24654346-24654482,24654626-24654959,
           24655067-24655153,24655254-24655580
          Length = 365

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = +3

Query: 621 LANRMADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGPRLKRLGSNDVIFS 800
           L ++M++++   +    N   C+S+ V D+ NN  +  RP + S    +    + D +  
Sbjct: 280 LESKMSNLSPSCLIDKENVHACYSMMVGDMNNNRRSSKRPLQCSDSNEITTTSTYDSVLV 339

Query: 801 SD 806
            D
Sbjct: 340 DD 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,698,722
Number of Sequences: 37544
Number of extensions: 546672
Number of successful extensions: 1742
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1741
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)