Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120174.Seq
         (817 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_45241| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_59424| Best HMM Match : Gemini_C4 (HMM E-Value=4.5)                 29   6.0  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_56561| Best HMM Match : Hom_end_hint (HMM E-Value=4.1)              28   7.9  
SB_38996| Best HMM Match : Pepsin-I3 (HMM E-Value=1.7)                 28   7.9  
SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)                   28   7.9  

>SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1421

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +2

Query: 230 RPNPAPCSNSVAKQGDPLYLHPHTVLITKSGVIQLIMKSKL 352
           RP+  PC   ++ +    +LH  ++L+TK G ++++   K+
Sbjct: 125 RPSSLPCGRCLSDRDASKFLHTTSILLTKKGSLKIVFNEKI 165


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 540  ANEMIVARRDAETARQDCENARRKTAQLANRMADIAQDVIAKPSNPQLC 686
            A+ ++V R DAE   +     RR+    +N    I  ++ +K +NP LC
Sbjct: 3361 ASSLVVVREDAEPVAR---RRRRRAVDTSNTTTPITTNLTSKVTNPSLC 3406


>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -2

Query: 297 CGCKYSGSPCFATLLEHGAGFGRHAQTSICTCRRRGHVLPVHNLHILNCWRCPW 136
           C C Y G+     + E  A   R A+  +CT  R   +L  +N  + NC RC +
Sbjct: 175 CVCVYGGTG----ISEQIAELKRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTY 224


>SB_45241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 522 RSLILFANEMIVARRDAETARQDCE-NARRKTAQLANRMADIAQDVIAKPSN 674
           RS    AN  I ++RD  T++ DC+ +A  K     N  ++  + +I K  N
Sbjct: 55  RSTSSLANNTIPSKRDKRTSKHDCDGSANNKRTNKHNDGSNNKRTIITKHDN 106


>SB_59424| Best HMM Match : Gemini_C4 (HMM E-Value=4.5)
          Length = 235

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = -1

Query: 769 FRRGPSDRFCGRRNANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAVFRRAFSQ 590
           FR+  S+      +   +LP+     L H CG  G    SC  SA  + + ++  R  + 
Sbjct: 11  FRKYGSNSRATFVDGKEVLPSLPVLSLTHGCGCSG-GSKSCCGSASSIEASSIVTRTHAS 69

Query: 589 SCRAVSASRRATIIS 545
           +   V+ S  A  IS
Sbjct: 70  TAFMVAGSNNAEWIS 84


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +2

Query: 251 SNSVAKQGDPLYLHPHTVLITKSGVIQLIMKSKLPYAIELQEWL-LEEVIP-QVLC-TGK 421
           S+ + K   P   HP TVLI    +I L + + L   I LQ  L L+ +IP QVL     
Sbjct: 320 SSPLYKSSPPTSTHPSTVLIPLQVLIPLQVLTPLQVLIPLQVLLPLQVLIPLQVLIPLHV 379

Query: 422 YAPAVEMDTNDVIAKIDDLT 481
            AP   + T  V+  +  LT
Sbjct: 380 LAPLQVVITLQVLTSLQVLT 399


>SB_56561| Best HMM Match : Hom_end_hint (HMM E-Value=4.1)
          Length = 390

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = +3

Query: 555 VARRDAETARQDCENARRKTAQLANRM------ADIAQDVIAKPSNPQLCHSLAVCDVGN 716
           V   D E     CE    + A++A ++      AD  + ++ K + PQ CH + V  V +
Sbjct: 108 VLEADIEDEEAVCEAVNDRIAKIAKKLWGSSIAADRLKPLLTKHAKPQNCHEITVPRVNS 167

Query: 717 NEFAFLRPQKR 749
             +A +   KR
Sbjct: 168 EIWAKMPGFKR 178


>SB_38996| Best HMM Match : Pepsin-I3 (HMM E-Value=1.7)
          Length = 865

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -1

Query: 688 WHSCGLLGLAITSCAMSAMRLASCAVFRRAFSQSCRAVSA 569
           W  CGLL    T+      +  SC  F  A S S   ++A
Sbjct: 810 WSRCGLLSCPTTTSPAKRRKTPSCRTFAPALSPSATQLAA 849


>SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)
          Length = 1195

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +3

Query: 180  AIRVHVDGKYKSTFEHADQIQHHAPIAWQSRATRCICTHTQCSLPNLA*FN 332
            A+R+HV G  K     + Q+  HAP A  S     +C  T C   N   FN
Sbjct: 1107 ALRLHVTGVTKLLLPLSRQLASHAPSATASVHRTLVCVAT-CVSTNKMRFN 1156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,520,735
Number of Sequences: 59808
Number of extensions: 598588
Number of successful extensions: 1535
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)