Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120174.Seq
         (817 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    28   0.40 
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    25   2.8  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    24   6.4  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   8.5  

>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1099

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = +3

Query: 564  RDAETARQDCENARRKTAQLANRMADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQ 743
            RDAE+  + CE A+R TA L     D  +  +A   N Q    +A  +    E    R  
Sbjct: 988  RDAESWSRICEAAKRITASLQQAWDD-ERAALAAHGNEQHFEEVADLEARRAEIRRARND 1046

Query: 744  KRSLGPRLKR 773
            +R+   R  R
Sbjct: 1047 RRNASRRAAR 1056


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
            gambiae RT2 retroposon. ).
          Length = 1222

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 564  RDAETARQDCENARRKTAQL 623
            RDA++  + CE A+R TAQL
Sbjct: 1051 RDADSWSRICEGAKRITAQL 1070


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
           protein.
          Length = 3325

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 621 LANRMADIAQDVIAKPSNPQ 680
           L NR+ DI+++  A PS+P+
Sbjct: 408 LYNRLRDISEETSALPSHPR 427


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = +3

Query: 237 IQHHAPIAWQSRATRCICTHTQC 305
           + HH  +  Q R   C C + +C
Sbjct: 425 LHHHQQVHNQQRILYCFCRNVEC 447


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 883,068
Number of Sequences: 2352
Number of extensions: 18848
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86487024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)