Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120174.Seq
         (817 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical pr...    31   0.75 
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr...    29   5.3  
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch...    29   5.3  
AL117195-9|CAB55016.2|  710|Caenorhabditis elegans Hypothetical ...    28   7.0  
AF026215-4|AAB71322.1|  843|Caenorhabditis elegans Hypothetical ...    28   9.2  

>Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical
           protein ZK632.5 protein.
          Length = 824

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +3

Query: 126 RFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHHAP-IAWQ---SRATRCICT 293
           R   +D  +SLK V+  + + V +DG+YK        ++++ P +AW    +  TR +  
Sbjct: 93  RLSDEDFENSLKEVSLSQKLMVRIDGEYKYRLYSKPIVRNNIPQLAWDISPALRTRKVAE 152

Query: 294 HTQCSLPN 317
             + S PN
Sbjct: 153 KDEISPPN 160


>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
            T18D3.4 protein.
          Length = 1947

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +3

Query: 504  QIGGSNRSLILFANEMIVARRDAETARQDCENARRKTAQLANRMADIAQDV 656
            +I  +NR  + F+NE+  A+R AE   ++ +N    +  LA  +  + + +
Sbjct: 1313 KIQAANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKESI 1363


>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
            T18D3.4 protein.
          Length = 1947

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +3

Query: 504  QIGGSNRSLILFANEMIVARRDAETARQDCENARRKTAQLANRMADIAQDV 656
            +I  +NR  + F+NE+  A+R AE   ++ +N    +  LA  +  + + +
Sbjct: 1313 KIQAANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKESI 1363


>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
            protein.
          Length = 1947

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +3

Query: 504  QIGGSNRSLILFANEMIVARRDAETARQDCENARRKTAQLANRMADIAQDV 656
            +I  +NR  + F+NE+  A+R AE   ++ +N    +  LA  +  + + +
Sbjct: 1313 KIQAANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKESI 1363


>AL117195-9|CAB55016.2|  710|Caenorhabditis elegans Hypothetical
           protein Y57A10A.13 protein.
          Length = 710

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = +2

Query: 254 NSVAKQGDPLYLHPHTVLITKSGVIQLIMKSKLPYAIELQEWLLEEVIPQVLCTGKYAPA 433
           NS A++G  + ++P  VL  +     L    K+P A E ++W   +    VLC       
Sbjct: 145 NSAARKGKNVTINPRVVLGNELAAKLLEEMLKIPLAPESKQW---KTAKYVLCPSSCPQQ 201

Query: 434 VEMDTNDVIAK 466
           +E+   ++IAK
Sbjct: 202 MEV-FGEIIAK 211


>AF026215-4|AAB71322.1|  843|Caenorhabditis elegans Hypothetical
           protein F09G2.4 protein.
          Length = 843

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/41 (48%), Positives = 22/41 (53%)
 Frame = +3

Query: 558 ARRDAETARQDCENARRKTAQLANRMADIAQDVIAKPSNPQ 680
           A RDAE  R   E ARR+ AQ AN   D   D IA P  P+
Sbjct: 410 AERDAEETRLRMERARRQ-AQ-ANESDDSDDDDIAAPIVPR 448


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,167,777
Number of Sequences: 27780
Number of extensions: 430999
Number of successful extensions: 1145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)