Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120174.Seq
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   5.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.9  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   7.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   7.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   7.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   7.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 316 FGNEHCVWVQIQRVALLCHAIGAWCWIWS 230
           FG++  V   + R    C+A GA+ WI S
Sbjct: 348 FGSDQEV-AGVMRAVKRCNATGAFSWIGS 375


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +1

Query: 310 YQIWRDSTDNEVQIALRHRITRMAFGG 390
           Y +WR++  +   +  R    ++A GG
Sbjct: 399 YMVWRETISSTATLGFRVEGIKLAHGG 425


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +1

Query: 310 YQIWRDSTDNEVQIALRHRITRMAFGG 390
           Y +WR++  +   +  R    ++A GG
Sbjct: 314 YMVWRETISSTATLGFRVEGIKLAHGG 340


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +1

Query: 310 YQIWRDSTDNEVQIALRHRITRMAFGG 390
           Y +WR++  +   +  R    ++A GG
Sbjct: 633 YMVWRETISSTATLGFRVEGIKLAHGG 659


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 183 IRVHVDGKYKSTFEHADQIQH 245
           + V+ DG Y + FE ++ I H
Sbjct: 34  LEVNFDGNYINNFETSNGISH 54


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -2

Query: 648 AQCPPCGWPAAPFSGARFRN 589
           A   PC W A P+ G    N
Sbjct: 296 ANTKPCTWAARPWQGYMTNN 315


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -2

Query: 648 AQCPPCGWPAAPFSGARFRN 589
           A   PC W A P+ G    N
Sbjct: 296 ANTKPCTWAARPWQGYMTNN 315


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -2

Query: 648 AQCPPCGWPAAPFSGARFRN 589
           A   PC W A P+ G    N
Sbjct: 296 ANTKPCTWAARPWQGYMTNN 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,787
Number of Sequences: 438
Number of extensions: 4969
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)