Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120171.Seq
         (838 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28145| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.5e-05)       33   0.38 
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)               32   0.66 

>SB_28145| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.5e-05)
          Length = 340

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = -2

Query: 507 VLYSFSGRYTFEYNKHGFKFLDIKVCGAARHGHITRCAGRVWRFNSIVVYGAQKNAVSAH 328
           ++ S+  R +FE NK+   ++  K C     G+I    G     + +VV G+  NA+   
Sbjct: 203 LMRSYKFRLSFE-NKNCVDYITEKYCYPLEKGNIPIVLGGASYDSKLVVPGSYINALDFP 261

Query: 327 FVGALFDYVVY 295
            V AL DY+ Y
Sbjct: 262 SVKALADYIQY 272


>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
          Length = 1775

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = +1

Query: 226  GQFAHRTRRYKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSS 405
            G   H     +L + +I  K L+++ I K+  N  GT+ +   T  DYG  S N      
Sbjct: 1367 GNKYHSISERRLGKPHIGRKTLAVNKIDKDDDNDDGTDEVVKQTFDDYG--SRNEVVWHG 1424

Query: 406  NVTMTRGTANFDIKE 450
            N    R T    ++E
Sbjct: 1425 NRIQERSTKRAALEE 1439


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,713,062
Number of Sequences: 59808
Number of extensions: 547138
Number of successful extensions: 1513
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1510
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)