Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120171.Seq
         (838 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    25   2.9  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    25   2.9  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            24   6.6  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    24   6.6  

>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 250 RYKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGT--VYDYGVKSPNAAST 399
           +++ SQ+  + +  S+D   +E SN V  +    GT  V +Y    P++ ST
Sbjct: 621 QHQQSQLQHSHQAQSLDQQSQENSNSVANSEQRYGTLPVAEYAAIKPDSLST 672


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 624 TPECSWICAIRAPLVRTAAPCWGRSSTQSCCR 529
           T  C  + A+    +R AAP W  + T   CR
Sbjct: 788 TSRCRLLAAVADSTMRYAAPVWHGALTNRECR 819



 Score = 23.8 bits (49), Expect = 6.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 509 WHVAIRSRQHDCVLDRPQHGAAVR 580
           WH A+ +R+   +L R Q  AA+R
Sbjct: 809 WHGALTNRECRSLLKRVQRKAAIR 832


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 530  DFESQHAMSSTVLVGVIPL-NTINMDLNS 447
            DF   +  SST+  G IPL N IN +L S
Sbjct: 987  DFLVYYDNSSTLCTGAIPLENVINGNLTS 1015


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 606 ICAIRAPLVRTAAPCWGRSSTQSCCR 529
           + A+ A ++R  AP W  ++    CR
Sbjct: 789 LAAVAASIIRYGAPVWTEATDLQWCR 814


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 882,407
Number of Sequences: 2352
Number of extensions: 18397
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88478514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)