Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120171.Seq
         (838 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical ...    29   5.4  
AF101309-3|AAN60514.1|  760|Caenorhabditis elegans Hypothetical ...    28   7.2  
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ...    28   7.2  
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ...    28   7.2  

>AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical
           protein Y48G9A.9a protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 119 NLNSLTEASPSLGQSSESVESDENKRLNVK-LNNARVANLRI 241
           N N++ E  P+  QSS   E+D++ R  V+ LNN  +A  ++
Sbjct: 17  NNNNVNEKRPASAQSSNGTETDDHHRKYVETLNNFIIATEKL 58


>AF101309-3|AAN60514.1|  760|Caenorhabditis elegans Hypothetical
           protein H24G06.1c protein.
          Length = 760

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -3

Query: 617 SAVGFAQFAHLSFGQRPRVGVDQAHNH---AVDFESQHAMSST 498
           +A G      LSF   P + V  AH+H   ++DF S HA +S+
Sbjct: 491 TATGMLYIVDLSFSDTPIIDVINAHDHDVTSIDF-SDHASTSS 532


>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
           protein H24G06.1b protein.
          Length = 1601

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -3

Query: 617 SAVGFAQFAHLSFGQRPRVGVDQAHNH---AVDFESQHAMSST 498
           +A G      LSF   P + V  AH+H   ++DF S HA +S+
Sbjct: 491 TATGMLYIVDLSFSDTPIIDVINAHDHDVTSIDF-SDHASTSS 532


>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
           protein H24G06.1a protein.
          Length = 1680

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -3

Query: 617 SAVGFAQFAHLSFGQRPRVGVDQAHNH---AVDFESQHAMSST 498
           +A G      LSF   P + V  AH+H   ++DF S HA +S+
Sbjct: 491 TATGMLYIVDLSFSDTPIIDVINAHDHDVTSIDF-SDHASTSS 532


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,175,808
Number of Sequences: 27780
Number of extensions: 409641
Number of successful extensions: 1129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)