Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120170.Seq
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    30   0.32 
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    29   0.74 
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    28   1.7  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    27   3.0  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    26   5.2  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    26   6.9  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.1  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    25   9.1  

>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 619 KFNDKRLFLTELRDDVAREPDVQFEESDNICKFYTHHTD 735
           + +D+  FLT L   V  E +V+    +NI   YT H+D
Sbjct: 568 RLDDENGFLTLLEPPVNYENEVESSSGENIVSMYTGHSD 606


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +2

Query: 413 DMFGNDAELSKLIWMLIFTNKTYVSTTLIRTNANLLTNTESFF-----LKNTTKLFSTCI 577
           + +GN +++    W+      T  S T   T  N+ +  ESF      ++N T + ++C+
Sbjct: 216 EYYGNHSDVMHPKWVHSLFEGTLTSETKCLTCENITSRDESFLDLSIDIENHTSV-TSCL 274

Query: 578 KQFTKSNMLT 607
           + F+ S ML+
Sbjct: 275 RSFSASEMLS 284


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +1

Query: 463 FYQQNVRVDHVDSHEREFVNQHGEFFFKEHNKIIQYLYQTIHKIEYVDMLMDKFNDKRLF 642
           FY+ N  +    S+ RE + ++ +FF+     + +Y ++ +  I         FN K+ F
Sbjct: 300 FYRHNNYIISDSSNTREVLRRYSDFFWLHSYLMKKYPFRRVPLIPLKKFHSKCFNSKQFF 359

Query: 643 LT 648
            T
Sbjct: 360 RT 361


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 325 PTRFTFQVVQHVGNLVLVYVQSKRIKFSS 239
           P RFTF +  HV + V+ + ++K+ K  S
Sbjct: 146 PARFTFHLFNHVMDSVVPFDEAKKFKVRS 174


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -2

Query: 680 SGSRATSSRNSVKNKRLSLNLSINMSTYSIL 588
           S SR+TSSR+   +++L  N S++ S  SIL
Sbjct: 93  SSSRSTSSRSDKDSEKLYSNNSLSSSHSSIL 123


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -2

Query: 287 KPCSCLRTKQANQIFI--VQIPQIAKQVV*RDSHIGLACVAIAHVVN 153
           K C CL  +Q  Q F+  VQ    A+    R S  GL C A +   N
Sbjct: 114 KVCICLSQEQLEQYFVPLVQRLSTAEWFTSRASSAGLYCAAYSQSEN 160


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 484 VDHVDSHE--REFVNQHGEFFFKEHNKIIQYLYQTIHKIE 597
           +D  + HE   E+ N +  F  KEH+K+I   Y +   I+
Sbjct: 761 LDCYEIHEFPSEWENDYAPFLLKEHHKVIGETYVSSFDIQ 800


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 24 EYLPEDAFNYMLSTSTDELSIYRIY 98
          E+ PE +  Y   TS DELS  +IY
Sbjct: 3  EHSPEASSTYAQVTSNDELSSNKIY 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,030,593
Number of Sequences: 5004
Number of extensions: 60144
Number of successful extensions: 244
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)