Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120170.Seq
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0463 + 23879587-23879771,23879783-23881658                       30   2.4  
06_03_0813 - 24853119-24854480,24854711-24855442,24855556-248559...    30   2.4  

>11_06_0463 + 23879587-23879771,23879783-23881658
          Length = 686

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 661 DVAREPDVQFEESDNICKFYTHH 729
           DVA EP  ++  SDN C FY  H
Sbjct: 414 DVAGEPVTRYSHSDNKCTFYEGH 436


>06_03_0813 -
           24853119-24854480,24854711-24855442,24855556-24855962,
           24856091-24856359,24856681-24856733,24857019-24857078,
           24857309-24857363,24858080-24858155,24858225-24858801
          Length = 1196

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 472 QNVRVDHVDSHEREFVNQHGEFFFKEHNKIIQYLYQTIHK 591
           +NV + HV   ER  V + G   ++ +  I++Y Y  +HK
Sbjct: 507 KNVPIPHVSPEERFLVGRIGPKEYRIYRCIVRYGYHDVHK 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,812,885
Number of Sequences: 37544
Number of extensions: 353686
Number of successful extensions: 911
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)