Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120170.Seq
(771 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59284| Best HMM Match : CBS (HMM E-Value=1.2e-15) 29 4.2
SB_22| Best HMM Match : Disintegrin (HMM E-Value=0.39) 29 4.2
SB_57228| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_26527| Best HMM Match : Filament_head (HMM E-Value=7.7) 28 7.3
SB_5935| Best HMM Match : PvlArgDC (HMM E-Value=2.6) 28 7.3
SB_54816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_47883| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-14) 28 9.6
SB_43041| Best HMM Match : F5_F8_type_C (HMM E-Value=2.3e-10) 28 9.6
SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04) 28 9.6
>SB_59284| Best HMM Match : CBS (HMM E-Value=1.2e-15)
Length = 397
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 336 DTVDRHGLHFKLCNMSETLFLFTYKASESNFHRPNSTNRETSCL 205
D + G+H C + ETLFL + E+ HR ++E C+
Sbjct: 338 DVIGFEGVH--RCYLEETLFLIVERLIEARVHRLVVVDKEDHCI 379
>SB_22| Best HMM Match : Disintegrin (HMM E-Value=0.39)
Length = 226
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = -2
Query: 551 CSLKKNSPCWLTNSRSCESTWSTRTFCW*KLASKLICSILHRYQTCPLS 405
C L K+SPC LT S +C+ T + C L C L R TC L+
Sbjct: 41 CDLTKSSPCDLTKSSTCDLTKGST--C--DLTKSSTCD-LTRNSTCDLT 84
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = -2
Query: 551 CSLKKNSPCWLTNSRSCESTWSTRTFCW*KLASKLICSILHRYQTCPLS 405
C L +NS C LT S +C+ T S+ C L C L R TC L+
Sbjct: 89 CDLTRNSTCDLTKSSTCDLTKSST--C--DLTKSSTCD-LTRNSTCDLT 132
>SB_57228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 75 ELSIYRIYHIAKMCRDVKMLKTNMAIVNYMGNCNTCQADM 194
E I +IY+ K + VKM K + N +C+ C+ ++
Sbjct: 200 ESDIKKIYNTFKFSKKVKMSKKDKITYNNATHCHICEGEL 239
>SB_26527| Best HMM Match : Filament_head (HMM E-Value=7.7)
Length = 162
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 692 SNWTSGSRATSSRNSVKNKRLSLNLSINMSTYSIL 588
S W GSRA ++V + +S NL +N++ ++L
Sbjct: 38 SAWVLGSRAVVPASAVPEELVSQNLDVNLAVNNLL 72
>SB_5935| Best HMM Match : PvlArgDC (HMM E-Value=2.6)
Length = 363
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 692 SNWTSGSRATSSRNSVKNKRLSLNLSINMSTYSIL 588
S W GSRA ++V + +S NL +N++ ++L
Sbjct: 38 SAWVLGSRAVVPASAVPEELVSQNLDVNLAVNNLL 72
>SB_54816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 248 FDSLALYVNKNKVSDMLHNLKCKPCRSTVSGSRPKCKCY 364
F+ L L VNK D+L + C P V G C Y
Sbjct: 143 FECLELLVNKGARIDILDSKGCSPLDFAVRGGNFDCAAY 181
>SB_47883| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-14)
Length = 265
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +3
Query: 48 NYMLSTSTDELSIYRIYHIAKMCRDVKMLKTNMAIVNYMGNCNTCQADMRVALNNLFRDL 227
+Y+L++ DE + ++ K+C D K N A +NY C+ M+V N+ + L
Sbjct: 26 HYLLASPYDETGVGELWECYKLCYDD---KENCASINYDMKKGRCKR-MKVTHVNMRKQL 81
Query: 228 WNLDD 242
+++
Sbjct: 82 VKMEN 86
>SB_43041| Best HMM Match : F5_F8_type_C (HMM E-Value=2.3e-10)
Length = 234
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +3
Query: 48 NYMLSTSTDELSIYRIYHIAKMCRDVKMLKTNMAIVNYMGNCNTCQADMRVALNNLFRDL 227
+Y+L++ DE + ++ K+C D K N A +NY C+ M+V N+ + L
Sbjct: 26 HYLLASPYDETGVGELWECYKLCYDD---KENCASINYDMKKGRCKR-MKVTHVNMRKQL 81
Query: 228 WNLDD 242
+++
Sbjct: 82 VKMEN 86
>SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)
Length = 1223
Score = 27.9 bits (59), Expect = 9.6
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = -3
Query: 733 RCGACKICKCYPILQTGHRVRVQHHRATRLKTNVYH*TCPSTCQHIRFCELFDTSTE*FC 554
+C A CY + G+ + +H + ++L+ P +H E FD +T
Sbjct: 278 QCCAVFCESCYNLEHQGNERKRRHEKQSKLR--------PICTEHRHPLEFFDFTTSRAL 329
Query: 553 CVL*KKTLRVG*QIRV 506
CVL KK L+ Q+ +
Sbjct: 330 CVLCKKALQSESQVEL 345
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,922,547
Number of Sequences: 59808
Number of extensions: 464926
Number of successful extensions: 1560
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1542
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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